View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_119 (Length: 242)
Name: NF17833_low_119
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_119 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 974342 - 974562
Alignment:
| Q |
1 |
aaaaattatgtttaaggaaataatggagttttgtactcactcttagttcttcaagagctttgggatggtcatggaggtacttcacagccatcattgatgt |
100 |
Q |
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| T |
974342 |
aaaaattatgcttaaggaaataatggagttttgtactcactcttagttcttcaagagctttgggatggtcatggaggtacttcacagccatcattgatgt |
974441 |
T |
|
| Q |
101 |
ggttgaaacagtttcataaccagaatacataagtgtaatcacttgatcaatgatttcttcatcacttagtttgtacctattttcttctctttccatcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
974442 |
ggttgaaacagtttcataaccagaatacataagtgtaatcacttgatcaatgatttcttcatcacttagtttgtacttattttcttctctttccatcaaa |
974541 |
T |
|
| Q |
201 |
taaccaagcatgtctttgtga |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
974542 |
taaccaagcatgtctttgtga |
974562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 5589527 - 5589748
Alignment:
| Q |
4 |
aattatgtttaaggaaataatggagtttt-gtactcactcttagttcttcaagagctttgggatggtcatggaggtacttcacagccatcattgatgtgg |
102 |
Q |
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| T |
5589527 |
aattatgtttaaggaaataatggagtttttgtactcactctaagttcttcaagagctttgggatggtcatggaggtatttcacagccatcattgaagtgg |
5589626 |
T |
|
| Q |
103 |
ttgaaacagtttcataaccagaatacataagtgtaatcacttgatcaatgatttcttcatcacttagtttgtacctattttcttctctttccatcaaata |
202 |
Q |
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| T |
5589627 |
ttgaaacagtttcataaccagaatacataagtgtaatcactagatcaatgatttcttcatcacttagtttgtacttattttcttctctttccatccaaca |
5589726 |
T |
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| Q |
203 |
accaagcatgtctttgtgaatt |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
5589727 |
accaagcatgtctttgtgaatt |
5589748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 5065580 - 5065702
Alignment:
| Q |
51 |
tcaagagctttgggatggtcatggaggtacttcacagccatcattgatgtggttgaaacagtttcataaccagaatacataagtgtaatcacttgatcaa |
150 |
Q |
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|||||| |||| ||||| ||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | | |||||| |
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| T |
5065580 |
tcaagaactttaggatgatcatgcaggtactttacagccatcattgatgtagttgaaatagtttcataaccagaatacataattgtaatgattagatcaa |
5065679 |
T |
|
| Q |
151 |
tgatttcttcatcacttagtttg |
173 |
Q |
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| | |||||||||| ||| |||| |
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| T |
5065680 |
taagttcttcatcatttaatttg |
5065702 |
T |
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