View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_12 (Length: 626)
Name: NF17833_low_12
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 6 - 495
Target Start/End: Complemental strand, 2917392 - 2916902
Alignment:
| Q |
6 |
agaagcatagggcaggtcagagaatcacatccaaccaatagaatagcaacatcataagaggcccacatcaactgatcnnnnnnnccaatagaattcatat |
105 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
2917392 |
agaagcattgggcaggtcagagaatcacatccaaccaatagaatagcaacatcataagaggcccacatcaactgatcaaaaaaaccaatagaattcaaat |
2917293 |
T |
|
| Q |
106 |
ttgtggaaattgatgcattcacaataatttataccaatctttacttgtgaaaagtataataataacgacagagactttacaataactgtttggtaggtag |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2917292 |
ttgtggaaattgatgcattcacaataatttataccaatctttacttgtgaaaagtataataataacgacagagactttacaataattgtttggtaggtag |
2917193 |
T |
|
| Q |
206 |
tgttgggttggtccacctagcagcacaaacttgactacttt-caccttataattccatttttgtcccttccctatgtatgtacattggacaccaattatt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2917192 |
tgttgggttggtccacctagcagcacaaacttgactacttttcaccttataattccatttttgtcccttccctatgtatgtacattggacaccaattatt |
2917093 |
T |
|
| Q |
305 |
ttcctacattctttctttctcactctcaaactcttcaacttttcaatcttcctattgatcagtctgctctttttgaaggatggttgaacaaattccatat |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2917092 |
ttcctacattctttctttctcactctcaaactcttcaacttttcaatcttcctattgatcagtctgctctttttgaaggatggttgaacaaattccatat |
2916993 |
T |
|
| Q |
405 |
ggccttactgaaagtatcattaaaaggtgaacaaatttttcatcccttactctgcacatttcattataattgtaacatctaacatacatgg |
495 |
Q |
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| T |
2916992 |
ggccttactgaaagtatcattaaaaggtgaacaaatttttcatcccttactctgcacatttcattataattgtaacatctaacatacatgg |
2916902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 505 - 610
Target Start/End: Complemental strand, 2916778 - 2916673
Alignment:
| Q |
505 |
ttaatacctttttagaagaaaaatctcaaaatgaaaacatttagttagtgtactgaatttttgtttctttttacagcttggcttctgaggcctgtcgtga |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2916778 |
ttaatacctttttagaagaaaaatctcaaaatgaaaacatttagttagtgtactgaatttttgtttctttttacagcttggcttctgaggcctgtcgtga |
2916679 |
T |
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| Q |
605 |
atttcg |
610 |
Q |
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|||||| |
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| T |
2916678 |
atttcg |
2916673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 330 - 441
Target Start/End: Complemental strand, 2912113 - 2912003
Alignment:
| Q |
330 |
tcaaactcttcaacttttcaatcttcctattgatcagtctgctctttttgaaggatggttgaacaaattccatatggccttactgaaagtatcattaaaa |
429 |
Q |
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||||||||| |||||||||||||||| | ||||||| |||| ||||||| |||||||| ||| | |||||||||||| ||| ||||||| ||||||||| |
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| T |
2912113 |
tcaaactctacaacttttcaatcttc-tcttgatcaatctgatctttttaaaggatggctgagctaattccatatggtcttgctgaaagcctcattaaaa |
2912015 |
T |
|
| Q |
430 |
ggtgaacaaatt |
441 |
Q |
| |
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|||||||||||| |
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|
| T |
2912014 |
ggtgaacaaatt |
2912003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 405
Target Start/End: Original strand, 13790626 - 13790664
Alignment:
| Q |
367 |
tctgctctttttgaaggatggttgaacaaattccatatg |
405 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||||| |
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| T |
13790626 |
tctgctctttttgaaggatggctgagcaaattccatatg |
13790664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 2978917 - 2978949
Alignment:
| Q |
371 |
ctctttttgaaggatggttgaacaaattccata |
403 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
2978917 |
ctctttttgaaggatggctgaacaaattccata |
2978949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 2988708 - 2988740
Alignment:
| Q |
371 |
ctctttttgaaggatggttgaacaaattccata |
403 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |
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|
| T |
2988708 |
ctctttttgaaggatggctgaacaaattccata |
2988740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 18355105 - 18355137
Alignment:
| Q |
371 |
ctctttttgaaggatggttgaacaaattccata |
403 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
18355105 |
ctctttttgaaggatggctgaacaaattccata |
18355137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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