View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_120 (Length: 242)
Name: NF17833_low_120
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_120 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 29606989 - 29607229
Alignment:
| Q |
14 |
catcacctgcaccaacacctgcaatagacacacc------------agcaccatcgcctgaagatgatgcgccagaaccaccgccaccccacaagcacaa |
101 |
Q |
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| T |
29606989 |
catcacctgcaccaacacctgcaatagacacaccatcatcagcaccagcaccatcgcctgaagatgatgcgccagaaccaccgccaccccacaagcacaa |
29607088 |
T |
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| Q |
102 |
gagaagaaaacacaagcatagtaagcataagaaacatcacgcactagctctagcaccagagcctacaagttcaagttcaacaatcattaggaggagtccc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607089 |
gagaagaaaacacaagcatagtaagcataagaaacatcacgcactagctctagcaccagagcctacaagttcaagttcaacaatcattaggaggagtccc |
29607188 |
T |
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| Q |
202 |
ccagcaccactggctgatgataatactacaatgagttcaga |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607189 |
ccagcaccactggctgatgataatactacaatgagttcaga |
29607229 |
T |
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