View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_124 (Length: 238)
Name: NF17833_low_124
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_124 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 18803953 - 18803733
Alignment:
| Q |
18 |
gtggaagccaccatactcgtcaagtaaggtctggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagatcaataactcagtcaatttat |
117 |
Q |
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| T |
18803953 |
gtggaagccaccatactcatcaagtaaggtctggggaaaatccgaatgaaaaagggtcacatatggtactagacctggatcaataactcagtcaatttat |
18803854 |
T |
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| Q |
118 |
attactatgattatgaacatcatgaatatgatatactaataaagtagggatcattatgcattaccattatcaagtagttcattgatcaggttgttgtaaa |
217 |
Q |
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| T |
18803853 |
attactatgattatgaacatcatgaatattatatactaataaagtagggattattatgcattaccattatcaagtagctcattgatcaggttgttgtaaa |
18803754 |
T |
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| Q |
218 |
atctgattccttctttgtttt |
238 |
Q |
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| T |
18803753 |
atctgattccttctttgtttt |
18803733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 41 - 237
Target Start/End: Original strand, 4624724 - 4624920
Alignment:
| Q |
41 |
gtaaggtctggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagatcaataactcagtcaatttatattactatgattatgaacatcat |
140 |
Q |
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| T |
4624724 |
gtaaggcctggggaagatcccaatgaaaaagggtcacatatggtatttgacctggatcaataattccatcaatttatattattatgagtatgaacatcat |
4624823 |
T |
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| Q |
141 |
gaatatgatatactaataaagtagggatcattatgcattaccattatcaagtagttcattgatcaggttgttgtaaaatctgattccttctttgttt |
237 |
Q |
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| T |
4624824 |
gaatatgatatactaataaagtatggaatattatgcattaccattagcaagtagctcatagatcaggttcttgtaaaatatgattcctgcttggttt |
4624920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 25018016 - 25018121
Alignment:
| Q |
127 |
attatgaacatcatgaatatgatatactaataaagtagggatcattatgcattaccattatcaagtagttcattgatcaggttgttgtaaaatctgattc |
226 |
Q |
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| T |
25018016 |
attatgaacttcatgaatatgatatacttgtgaagcatgtattattatgcattaccattatcaagtagctcattgatcagattgttgtaatatttgattc |
25018115 |
T |
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| Q |
227 |
cttctt |
232 |
Q |
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|||||| |
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| T |
25018116 |
cttctt |
25018121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 25039175 - 25039240
Alignment:
| Q |
172 |
tatgcattaccattatcaagtagttcattgatcaggttgttgtaaaatctgattccttctttgttt |
237 |
Q |
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| T |
25039175 |
tatgcattaccattatcaagtagttcattgatcaggttgttgtaatatttgattccttcttggttt |
25039240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 4600686 - 4600782
Alignment:
| Q |
141 |
gaatatgatatactaataaagtagggatcattatgcattaccattatcaagtagttcattgatcaggttgttgtaaaatctgattccttctttgttt |
237 |
Q |
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| T |
4600686 |
gaatatgatgtactaataaattatgtattattatgtattaccattagcaagtagctcatcaatcagattgttgtaaaatctgattccttcttggttt |
4600782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 25039059 - 25039141
Alignment:
| Q |
49 |
tggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagatcaataactcagtcaatttatattactatgattat |
131 |
Q |
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| T |
25039059 |
tggggaagatcccaatggaaaagggtcacaaatggtaccagacctggatcaataagtccatcaatttatattactatgattat |
25039141 |
T |
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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 4600413 - 4600505
Alignment:
| Q |
57 |
atccgaatgaaaaagcgtcacatatggtactagacctagatcaataactcagtcaatttatattactatgattatgaacatcatgaatatgat |
149 |
Q |
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| T |
4600413 |
atcccaatgaaaaagggttacatatggtatttgacctggatcaataattccatcaatttatattattatgagcatgaacatcacgaatatgat |
4600505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 25017906 - 25017999
Alignment:
| Q |
49 |
tggggaaaatccgaatgaaaaagcgtcacatatggtactagacctagat--caataactcagtcaatttatattactatgattatgaacatcat |
140 |
Q |
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| T |
25017906 |
tggggaagatcccagtgaaaaagggtcacaaatggtaccagacctatataccaataattccatcaatttatattactattattatgaacatcat |
25017999 |
T |
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