View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_128 (Length: 214)
Name: NF17833_low_128
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_128 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 18091908 - 18092088
Alignment:
| Q |
19 |
atggacatgttacaaaattccacactttcctacctagtaataattttcactttctctatacttctcctaatcaaatttcttattccaacaaacaaaacca |
118 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |
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| T |
18091908 |
atggacttgttacaaagttccacactttcctacctagtaataattttcactttctctatacttctccttatcaaatttcttactccaacaaacaaaacaa |
18092007 |
T |
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| Q |
119 |
accnnnnnnnccactctaagcttccaccaggtccttcaccacttcccataataggaaaccttctaaaactaggcaacaaac |
199 |
Q |
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| T |
18092008 |
accaaaaaaaccactctaagcttccaccaggtccttcacaacttcccataataggaaaccttctaaaactaggcaacaaac |
18092088 |
T |
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Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 18102052 - 18102232
Alignment:
| Q |
19 |
atggacatgttacaaaattccacactttcctacctagtaataattttcactttctctatacttctcctaatcaaatttcttattccaacaaacaaaacca |
118 |
Q |
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|||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
18102052 |
atggacttgttacaaagttccacacttacctacctagtaataattttcactttctctatacctctccttctcaaatttcttattccaacaaacaaaacca |
18102151 |
T |
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| Q |
119 |
accnnnnnnnccactctaagcttccaccaggtccttcaccacttcccataataggaaaccttctaaaactaggcaacaaac |
199 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18102152 |
acaaaataaactactctaagcttccaccaggtccttcaccacttcccataattggaaaccttctaaaactaggcaacaaac |
18102232 |
T |
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