View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_129 (Length: 206)
Name: NF17833_low_129
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_129 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 4e-83; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 39825930 - 39826098
Alignment:
| Q |
18 |
atatttatttattgcataaggcatataataaattctcttttgcattaaatctatatggcagggatccatgatgacaccccatgtaaatccaagggcaaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39825930 |
atatttatttattgcataaggcatataataaattct--tttgcattcaatctatatggcagggatccatgatgacaccccatgtaaatccaagggcaaca |
39826027 |
T |
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| Q |
118 |
gagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
188 |
Q |
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| T |
39826028 |
gagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
39826098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 39922096 - 39922260
Alignment:
| Q |
22 |
ttatttattgcataaggcatataataaattctcttttgcattaaatctatatggcagggatccatgatgacaccccatgtaaatccaagggcaacagagt |
121 |
Q |
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||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39922096 |
ttatttattgcataacacatataattaattct--tttgcattaaatctatatggcagggatccatgatgacaccccatgtaaatccaagggcaacagagt |
39922193 |
T |
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| Q |
122 |
atggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
188 |
Q |
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| T |
39922194 |
atggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
39922260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 39902491 - 39902659
Alignment:
| Q |
18 |
atatttatttattgcataaggcatataataaattctcttttgcattaaatctatatggcagggatccatgatgacaccccatgtaaatccaagggcaaca |
117 |
Q |
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| T |
39902491 |
atatttatttattgcataacacatataattaattct--tttgcattcaatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaaca |
39902588 |
T |
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| Q |
118 |
gagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39902589 |
gagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
39902659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 39910949 - 39911117
Alignment:
| Q |
18 |
atatttatttattgcataaggcatataataaattctcttttgcattaaatctatatggcagggatccatgatgacaccccatgtaaatccaagggcaaca |
117 |
Q |
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|
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| T |
39910949 |
atatttatttattgcataacagatataattaattct--tttgcattcaatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaaca |
39911046 |
T |
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| Q |
118 |
gagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39911047 |
gagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
39911117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 39927788 - 39927956
Alignment:
| Q |
18 |
atatttatttattgcataaggcatataataaattctcttttgcattaaatctatatggcagggatccatgatgacaccccatgtaaatccaagggcaaca |
117 |
Q |
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|
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| T |
39927788 |
atatttatttattgcataacagatataattaattct--tttgcattcaatttatatggcagggatccatgatgacaccccatgtaaatccaagggcaaca |
39927885 |
T |
|
| Q |
118 |
gagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
188 |
Q |
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|
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| T |
39927886 |
gagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
39927956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 69 - 188
Target Start/End: Original strand, 39805615 - 39805734
Alignment:
| Q |
69 |
tatatggcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttcca |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39805615 |
tatatggcagggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttcca |
39805714 |
T |
|
| Q |
169 |
aatggaaccaatgcaatgga |
188 |
Q |
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|||||||||||||||||||| |
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| T |
39805715 |
aatggaaccaatgcaatgga |
39805734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 39814854 - 39815019
Alignment:
| Q |
25 |
tttattgcataaggcatataataaattctcttttgcattaa----atctatatggcagggatccatgatgacaccccatgtaaatccaagggcaacagag |
120 |
Q |
| |
|
|||||||||||| |||||||| |||||| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39814854 |
tttattgcataacacatataattaattct--tttgcattaattcaatctatgtgacagggatccatgatgacaccccatgtaaatccaagggcaacagag |
39814951 |
T |
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| Q |
121 |
tatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
188 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39814952 |
tatggcatagtcttaagaggttctggtagaattcaaatagtgtttccaaatggaaccaatgcaatgga |
39815019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 22362159 - 22362048
Alignment:
| Q |
77 |
agggatccatgatgacaccccatgtaaatccaagggcaacagagtatggcatagtgataagaggttctggtagaattcaaatagtgtttccaaatggaac |
176 |
Q |
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||||||| |||||| |||| ||||| |||||||| |||||||||||| |||||| ||||||||| ||| |||||||| ||| | |||||||| |||| |
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| T |
22362159 |
agggatcaatgatggcaccacatgtgaatccaagtgcaacagagtataccatagtattaagaggttatggaagaattcagatactatttccaaacggaag |
22362060 |
T |
|
| Q |
177 |
caatgcaatgga |
188 |
Q |
| |
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|||||||||||| |
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| T |
22362059 |
caatgcaatgga |
22362048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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