View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_130 (Length: 202)
Name: NF17833_low_130
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_130 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 282711 - 282542
Alignment:
| Q |
18 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
282711 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt |
282612 |
T |
|
| Q |
118 |
tccatcaggaaagaactgccacaaaaggcttccagccccactacctcctttctttgtagagtttagaatt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
282611 |
tccatcaggaaagaactgccacaaaaggcttccagccccactacctcctttctttgtagagtttagaatt |
282542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 633141 - 633310
Alignment:
| Q |
18 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
633141 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt |
633240 |
T |
|
| Q |
118 |
tccatcaggaaagaactgccacaaaaggcttccagccccactacctcctttctttgtagagtttagaatt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
633241 |
tccatcaggaaagaactgccacaaaaggcttccagccccactacctcctttctttgtagagtttagaatt |
633310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 818944 - 819113
Alignment:
| Q |
18 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
818944 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt |
819043 |
T |
|
| Q |
118 |
tccatcaggaaagaactgccacaaaaggcttccagccccactacctcctttctttgtagagtttagaatt |
187 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
819044 |
tccatcaggaaagaactgccacaaaagggttccagccccactacctcctttctttgtagagtttagaatt |
819113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 6e-39; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 27518364 - 27518529
Alignment:
| Q |
18 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt |
117 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| || || |||||||| ||||||| |||||||| |||||| ||||||||||||||||| | ||| | |
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| T |
27518364 |
agttgaacaaagcaagcctcgtggattgaagggttacaatacttgaagtggaaggagattttgagaaaacaatagcataaccatcatccatattatccat |
27518463 |
T |
|
| Q |
118 |
tccatcaggaaagaactgccacaaaaggcttccagccccactacctcctttctttgtagagtttag |
183 |
Q |
| |
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||| |||| ||| | ||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
27518464 |
tccttcagaaaatacctgccacaaaaggcttccagccccactccctcctttctttgtggagtttag |
27518529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 27496882 - 27497047
Alignment:
| Q |
18 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt |
117 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| || || |||||||| ||||||| |||||||| |||||| ||||| || |||||||| | ||| || |
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| T |
27496882 |
agttgaacaaagcaagcctcgtggattgaagggttacaatacttgaagtggaaggagattttgagaaaacaatagcatagccgtcatccatattatcggt |
27496981 |
T |
|
| Q |
118 |
tccatcaggaaagaactgccacaaaaggcttccagccccactacctcctttctttgtagagtttag |
183 |
Q |
| |
|
||| |||||||| | ||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
27496982 |
tccttcaggaaatacctgccacaaaaggcttccagctccactccctcctttctttgtggagtttag |
27497047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 27388939 - 27388774
Alignment:
| Q |
18 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt |
117 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| || || |||||||| ||||||| |||||||| |||||| ||||||||||||||||| | ||| | |
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| T |
27388939 |
agttgaacaaagcaagcctcgtggattgaagggttacaatacttgaagtggaaggagattttgagaaaacaatagcataaccatcatccatattatccat |
27388840 |
T |
|
| Q |
118 |
tccatcaggaaagaactgccacaaaaggcttccagccccactacctcctttctttgtagagtttag |
183 |
Q |
| |
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||| ||| ||| | ||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
27388839 |
tccttcaaaaaatacctgccacaaaaggcttccagctccactccctcctttctttgtggagtttag |
27388774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 27494271 - 27494415
Alignment:
| Q |
40 |
ggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt---tccatcaggaaagaactgc |
136 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| | |||||||| ||||| ||||||||||||||||| | ||| || ||| |||| || | |||| |
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| T |
27494271 |
ggattgaagggatacaatacttgaagtggaaggggattttgagaaaacaa--gcataaccatcatccatattatccgttaatccttcagataacacctgc |
27494368 |
T |
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| Q |
137 |
cacaaaaggcttccagccccactacctcctttctttgtagagtttag |
183 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||| || ||||| |
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| T |
27494369 |
cacacgaggcttccagctccactccctcctttctttgttgaatttag |
27494415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 27500929 - 27501073
Alignment:
| Q |
40 |
ggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt---tccatcaggaaagaactgc |
136 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| | |||||||| ||||| ||||||||||||||||| | ||| || ||| |||| || | |||| |
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| T |
27500929 |
ggattgaagggatacaatacttgaagtggaaggggattttgagaaaacaa--gcataaccatcatccatattatccgttaatccttcagataacacctgc |
27501026 |
T |
|
| Q |
137 |
cacaaaaggcttccagccccactacctcctttctttgtagagtttag |
183 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||| || ||||| |
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|
| T |
27501027 |
cacacgaggcttccagctccactccctcctttctttgttgaatttag |
27501073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 27515721 - 27515865
Alignment:
| Q |
40 |
ggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcataaccatcatccatgtaatctgt---tccatcaggaaagaactgc |
136 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| | |||||||| ||||| ||||||||||||||||| | ||| || ||| |||| || | |||| |
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| T |
27515721 |
ggattgaagggatacaatacttgaagtggaaggggattttgagaaaacaa--gcataaccatcatccatattatccgttaatccttcagataacacctgc |
27515818 |
T |
|
| Q |
137 |
cacaaaaggcttccagccccactacctcctttctttgtagagtttag |
183 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||| || ||||| |
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|
| T |
27515819 |
cacacgaggcttccagctccactccctcctttctttgttgaatttag |
27515865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 27503540 - 27503618
Alignment:
| Q |
18 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttgaagtagaaggagcttttgagagaacaattgcata |
96 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| || || |||||||| ||||||| |||||||| |||||| ||||| |
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|
| T |
27503540 |
agttgaacaaagcaagcctcgtggattgaagggttacaatacttgaagtggaaggagattttgagaaaacaatagcata |
27503618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 2299141 - 2299097
Alignment:
| Q |
18 |
agttgaatagagcaagccttgtggattgaagggatatcatgcttg |
62 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
2299141 |
agttgaatagagaaagccttgtggattgaagggatatcatacttg |
2299097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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