View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_low_131 (Length: 202)

Name: NF17833_low_131
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_low_131
NF17833_low_131
[»] chr6 (9 HSPs)
chr6 (12-202)||(2621300-2621490)
chr6 (12-202)||(2589733-2589923)
chr6 (12-202)||(2435903-2436093)
chr6 (15-202)||(2675019-2675206)
chr6 (12-202)||(2571528-2571718)
chr6 (12-195)||(2598288-2598471)
chr6 (12-202)||(2449082-2449272)
chr6 (15-202)||(2643170-2643357)
chr6 (12-100)||(33788355-33788443)
[»] chr8 (1 HSPs)
chr8 (12-130)||(27731256-27731374)
[»] chr4 (1 HSPs)
chr4 (64-109)||(31440455-31440500)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 3e-99; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 2621300 - 2621490
Alignment:
Q  12 aagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621300 aagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattcttttgctagatgaagcaacaagtgcactagattctgaatccgaaagagttg 2621399  T
Q  112 tccaagaagctttagacaaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2621400 tccaagaagctttagacaaagccaccgttggacgcaccaccatcatcatcgctcaccgcttatccaccattcaaaatgcagacatcattgc 2621490  T

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Target: chr6; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 2589733 - 2589923
Alignment:
Q  12 aagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttg 111  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  2589733 aagcaaaggattgccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactcgattctgaatcagaaagggttg 2589832  T
Q  112 tccaagaagctttagacaaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgc 202  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  2589833 tccaagaagctctagacaaagctaccgttggacgcaccaccatcatcatcgctcaccgcctatctaccatccaaaatgcagacatcattgc 2589923  T

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Target: chr6; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 2435903 - 2436093
Alignment:
Q  12 aagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttg 111  Q
    |||||||||||| ||||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||| ||||||    
T  2435903 aagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctattgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttg 2436002  T
Q  112 tccaagaagctttagacaaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgc 202  Q
    ||||||||||| ||||||||||    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  2436003 tccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcaccgcttatccaccatccaaaatgcagacatcattgc 2436093  T

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Target: chr6; HSP #4
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 2675206 - 2675019
Alignment:
Q  15 caaaggatttccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtcc 114  Q
    ||||||||| ||||||||||||| || ||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |    
T  2675206 caaaggattgccattgcaagagccataataaaaatgcctaaaattttattactagatgaagcaacaagtgcacttgattctgaatccgaacgagttgttc 2675107  T
Q  115 aagaagctttagacaaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgc 202  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  2675106 aagaagctctagacaaagcggcggttggacgcaccaccatcatcatcgctcaccgcttatcaaccatccaaaatgcagacatcattgc 2675019  T

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Target: chr6; HSP #5
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 2571718 - 2571528
Alignment:
Q  12 aagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttg 111  Q
    |||||||| ||| | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||| |    
T  2571718 aagcaaagaattgcaattgcaagagccatcataaaaatgccaaaaattctattgttagacgaagcaacaagtgcactcgattctgaatccgaacgagtcg 2571619  T
Q  112 tccaagaagctttagacaaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgc 202  Q
    ||||||||||| ||||||||||  | |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||    
T  2571618 tccaagaagctctagacaaagctgcagttggacgaaccaccatcatcatcgctcaccgcttatctaccatccaaaatgcagacattattgc 2571528  T

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Target: chr6; HSP #6
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 2598471 - 2598288
Alignment:
Q  12 aagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttg 111  Q
    |||||||| ||| | ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||| |    
T  2598471 aagcaaagaattgcaattgcaagagccatcataaaaatgccaaaaattctattgttagacgaagcaacaagtgcactcgattctgaatccgaacgagtcg 2598372  T
Q  112 tccaagaagctttagacaaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagaca 195  Q
    ||||||||||| ||||||||||  | ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||    
T  2598371 tccaagaagctctagacaaagcttcagttggacgcaccaccatcatcatcgctcaccgattatctaccatccaaaatgcagaca 2598288  T

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Target: chr6; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 2449082 - 2449272
Alignment:
Q  12 aagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttg 111  Q
    |||||||||||||||||||||||||| || || ||||  |||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  2449082 aagcaaaggatttccattgcaagagccataatcaaaaatccaagaattctattgctagacgaagcaacaagtgcactagattttgaatccgaacgagttg 2449181  T
Q  112 tccaagaagctttagacaaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgc 202  Q
    ||||||||||||| || |||||||| |||| |||||||||||| ||||| ||||||||||||||||||||   || |||||| ||||||||    
T  2449182 tccaagaagcttttgagaaagccacagttgaacgcaccaccattatcatcgctcaccgcttatccaccatcagaactgcagatatcattgc 2449272  T

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Target: chr6; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 2643357 - 2643170
Alignment:
Q  15 caaaggatttccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtcc 114  Q
    ||||||||| ||||||||||||| || ||||||||||| |||||| ||||| | || ||||| ||||||||||| ||||||||||||||| || ||||||    
T  2643357 caaaggattgccattgcaagagccataataaaaatgcctaaaattttattgttggacgaagcgacaagtgcacttgattctgaatccgaacgaattgtcc 2643258  T
Q  115 aagaagctttagacaaagccaccgttggacgcaccaccatcatcattgctcaccgcttatccaccattcaaaatgcagacatcattgc 202  Q
    |||| ||| ||||||||| | | ||||||||||| ||||||||||| ||||| ||| |||||||||| |||||||| |||||||||||    
T  2643257 aagacgctctagacaaagtcgcagttggacgcacaaccatcatcatcgctcatcgcctatccaccatccaaaatgctgacatcattgc 2643170  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 33788443 - 33788355
Alignment:
Q  12 aagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatc 100  Q
    |||||||| ||  ||||||||||||||||||||||||  |||  ||||||  |||| ||||||||||| |||||||| || ||||||||    
T  33788443 aagcaaagaatagccattgcaagagctatcataaaaaatccagtaattcttctgcttgatgaagcaactagtgcacttgactctgaatc 33788355  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 27731256 - 27731374
Alignment:
Q  12 aagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattctattgctagatgaagcaacaagtgcactagattctgaatccgaaagagttg 111  Q
    ||||||||| |  ||||||||||||||||  ||| ||  || |||||  ||||||| ||||||||||||||||||||||||   ||||| ||| | ||||    
T  27731256 aagcaaagggtggccattgcaagagctattttaagaaaccctaaaatattattgcttgatgaagcaacaagtgcactagatgtcgaatcggaacgtgttg 27731355  T
Q  112 tccaagaagctttagacaa 130  Q
    | ||| |||||||||||||    
T  27731356 tacaacaagctttagacaa 27731374  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 31440455 - 31440500
Alignment:
Q  64 tgctagatgaagcaacaagtgcactagattctgaatccgaaagagt 109  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||    
T  31440455 tgcttgatgaagcaacaagtgcactggattctcaatccgaaagagt 31440500  T

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