View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_16 (Length: 594)
Name: NF17833_low_16
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Original strand, 2390948 - 2391514
Alignment:
| Q |
18 |
ggtgtgtagtgtatagagtaagatggcgtagttgaatgtggataatgtgaaattgacttgatgttgatttggtatttgcagcatgatgtggatgctgggg |
117 |
Q |
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| T |
2390948 |
ggtgtgtagtgtatagagtaagatggtgtagttgaatgtggataatgtgaaattgacttgatgttgatttggtatttgcagcatgatgtggatgctgggg |
2391047 |
T |
|
| Q |
118 |
tgttgaagaaagtcgttttggctgatggtgcagtggttactgtgaaaggtgcaagatcagtgagtcttcgccatcctctcactttacctctgccgttaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2391048 |
tgttgaagaaagtcgttttggctgatggtgcagtggttactgtgaaaggtgcaagatcagtgagtcttcgccatcctcttactttacctctgccgttaaa |
2391147 |
T |
|
| Q |
218 |
ccgaagccaaaatggctttgctgccgggcttctcacgttggctgagcatctccgccatgcttctcgtggccaagatgctccccttctttcactccggatt |
317 |
Q |
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| T |
2391148 |
ccgaagccaaaatggctttgctgccgggcttctcacgttggctgagcatctccgccatgcttctcgtggccaagatgctccccttctttcactccggatt |
2391247 |
T |
|
| Q |
318 |
gttggtcctacctcacttgaagccccttcctctgcatcaacttcttctaataacaggttgaagcttaagcgtcttgcacctggtcttgtggagttatcgt |
417 |
Q |
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| T |
2391248 |
gttggtcctacctcacttgaagccccttcctctgcatcaacttcttctaataacaggttgaagcttaagcgtcttgcacctggtcttgtggagttatcct |
2391347 |
T |
|
| Q |
418 |
ctcaatcaaaatccaaattagttgacacttccctgtctaccgttgatctccaggaggaagccccgaccctccttactccaacccagtttaccgcattgtg |
517 |
Q |
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| T |
2391348 |
ctcaatcaaaatccaaattagttgacacttccctgtctaccgttgatctccaggaggaagccccgaccctccttactcctacccagtttaccgcattgtg |
2391447 |
T |
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| Q |
518 |
gcctcttgcctctcttaatggatcaaatgcaaacttgttgggttttgagagattgttatcttctgtg |
584 |
Q |
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| T |
2391448 |
gcctcttgcctctcttaatggatcaaatgcaaacttgttgggttttgagagattgttatcttctgtg |
2391514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 201 - 586
Target Start/End: Complemental strand, 56190137 - 56189743
Alignment:
| Q |
201 |
ttacctctgccgttaaaccgaagccaaaatggctttgctgccgggcttctcacgttggctgagcatctccgccatgcttctcgtggccaagatgctcccc |
300 |
Q |
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| T |
56190137 |
ttacctctgcccttgaaccgaacacagaatggttttgctgctgggcttctcaccttggctgagcatctccgttgtgcttctcgtggccagagtgctcctc |
56190038 |
T |
|
| Q |
301 |
ttctttcactccggattgttggtcctacctcacttgaagccccttcctctgca---tcaacttcttctaataacaggttgaagcttaagcgtcttgcacc |
397 |
Q |
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| T |
56190037 |
ttctctcactccgcattgttggccctacttcgcttgaagccccttcctctgctgtgtcaacctcttccgataacaggttgaagctcaagcggcttgcacc |
56189938 |
T |
|
| Q |
398 |
tggtcttgtggagttatcgtctcaatcaaaatccaaa------ttagttgacacttccctgtctaccgttgatctccaggaggaagccccgaccctcctt |
491 |
Q |
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|| |||||||||||||||||||||||||||| ||||| | | || ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
56189937 |
tgctcttgtggagttatcgtctcaatcaaaacccaaagccaaatcaagcgagacttccctgtctaccgttgatctccaggaggaagccccgactctcctt |
56189838 |
T |
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| Q |
492 |
actccaacccagtttaccgcattgtggcctcttgcctctcttaatggatcaaatgcaaacttgttgggttttgagagattgttatcttctgtgct |
586 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | | |||||||||||||||| |
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| T |
56189837 |
actccaacccagtttactgcattgtggcctcttgcctcccttaatggatcaaatacaaacttgttgggttttgaaaaactgttatcttctgtgct |
56189743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 56190268 - 56190134
Alignment:
| Q |
23 |
gtagtgtatagagtaagatggcgtagttgaatgtggataatgtgaaattgacttgatgttgatttggtatttgcagcatgatgtggatgctggggtgttg |
122 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
56190268 |
gtagtatatagagtaagatggtgtagttgaatgtggataatgtgaaattgacttgatgttggtttggtatatgcagcatgatgtggatgctggggtgttg |
56190169 |
T |
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| Q |
123 |
aagaaagtcgttttggctgatggtgcagtggttac |
157 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
56190168 |
aagaaagttgttttggctgatggtgcagtggttac |
56190134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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