View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_low_19 (Length: 571)

Name: NF17833_low_19
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_low_19
NF17833_low_19
[»] chr4 (2 HSPs)
chr4 (37-518)||(48244173-48244654)
chr4 (203-247)||(2843583-2843627)
[»] chr2 (5 HSPs)
chr2 (188-248)||(26174926-26174985)
chr2 (259-306)||(35849468-35849515)
chr2 (186-231)||(21379518-21379563)
chr2 (188-232)||(11530029-11530073)
chr2 (172-248)||(44458229-44458305)
[»] chr7 (2 HSPs)
chr7 (186-232)||(30900129-30900175)
chr7 (203-248)||(44124546-44124591)
[»] chr6 (3 HSPs)
chr6 (415-465)||(34544733-34544783)
chr6 (183-248)||(2732931-2732996)
chr6 (188-248)||(1912507-1912567)
[»] chr1 (1 HSPs)
chr1 (252-306)||(23797878-23797932)
[»] chr5 (1 HSPs)
chr5 (183-232)||(39258580-39258629)


Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 37 - 518
Target Start/End: Complemental strand, 48244654 - 48244173
Alignment:
Q  37 gaagtagaaatatcacttacttaatcagccaatccctgaatatctatttaacaaccatcctcgaattactgcatgtttgagggcataaatttacatgtca 136  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48244654 gaagtagaaatatcacttacttaatgagccaatctctgaatatctatttaacaaccatcctcgaattactgcatgtttaagggcataaatttacatgtca 48244555  T
Q  137 tagttatacacaacattgctaaatggcagctagagcactatatcagagtggaatttgaacgaaacgctattgttctgcgatacactgtttagtacagtat 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||    
T  48244554 tagttatacacaacattgctaaatggcagctagagcactatatcagagtggaatttaaacaaatcgctattgttctgcgatacactgtttagtacagtat 48244455  T
Q  237 gttgtcaaatagattgtgcagtggaatttgaacagaccgctaatttccactatctggaattgacaacatttcttgtacactctatttaccttgtgagaat 336  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48244454 gttgtcaaatagattgtgcagtggaatttgaacaaaccgctaatttccactatctgcaattgacaacatttcttgtacactctatttaccttgtgagaat 48244355  T
Q  337 tcgactagtaacnnnnnnnncataattttttaaattcatctttaaacagacgcttagataaataaatcagtggcaatcaactatgtatcactaacacttc 436  Q
    ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48244354 tcgactagtaacaaaaaaaacataattttttaaattcatctttaaacagacgcttagataaataaatcagtggcaatcaactatgtatcactaacacttc 48244255  T
Q  437 taatcgaaagtgcgtctggtgtttgacaccgacacacgtacttacattcaattatgacaatcttttcgattactaccggtga 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48244254 taatcgaaagtgcgtctggtgtttgacaccgacacacgtacttacattcaattatgacaatcttttcgattactaccggtga 48244173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 2843627 - 2843583
Alignment:
Q  203 ctattgttctgcgatacactgtttagtacagtatgttgtcaaata 247  Q
    |||||||||||||||||||| |||||||||  |||||||||||||    
T  2843627 ctattgttctgcgatacactatttagtacaaaatgttgtcaaata 2843583  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 26174926 - 26174985
Alignment:
Q  188 aatttgaacgaaacgctattgttctgcgatacactgtttagtacagtatgttgtcaaatag 248  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||| | |||||||||||||||    
T  26174926 aatttgaac-aaatgctattgttctgcgatacactatttagtataatatgttgtcaaatag 26174985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 35849515 - 35849468
Alignment:
Q  259 ggaatttgaacagaccgctaatttccactatctggaattgacaacatt 306  Q
    |||||||||||| ||||||| ||||||| ||||| |||||||||||||    
T  35849515 ggaatttgaacaaaccgctattttccacaatctgcaattgacaacatt 35849468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 21379518 - 21379563
Alignment:
Q  186 ggaatttgaacgaaacgctattgttctgcgatacactgtttagtac 231  Q
    ||||||||||  || |||||||||||||||||||||||||| ||||    
T  21379518 ggaatttgaataaatcgctattgttctgcgatacactgtttggtac 21379563  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 11530029 - 11530073
Alignment:
Q  188 aatttgaacgaaacgctattgttctgcgatacactgtttagtaca 232  Q
    ||||||||| || | |||||||||||||||||||| |||||||||    
T  11530029 aatttgaacaaatcactattgttctgcgatacactatttagtaca 11530073  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 44458305 - 44458229
Alignment:
Q  172 cactatatcagagtggaatttgaacgaaacgctattgttctgcgatacactgtttagtacagtatgttgtcaaatag 248  Q
    ||||||| || ||||||||| |||| || ||||||||||| |||||||| | |||||||||   | |||||||||||    
T  44458305 cactatagcatagtggaattcgaacaaaccgctattgttccgcgatacaatatttagtacaaagtattgtcaaatag 44458229  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 30900175 - 30900129
Alignment:
Q  186 ggaatttgaacgaaacgctattgttctgcgatacactgtttagtaca 232  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||    
T  30900175 ggaatttgaacgaatcgctattgttcagcgatacactatttagtaca 30900129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 44124546 - 44124591
Alignment:
Q  203 ctattgttctgcgatacactgtttagtacagtatgttgtcaaatag 248  Q
    |||||||||||||||||||| |||||||||| || |||||||||||    
T  44124546 ctattgttctgcgatacactatttagtacagaatattgtcaaatag 44124591  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 34544733 - 34544783
Alignment:
Q  415 aactatgtatcactaacacttctaatcgaaagtgcgtctggtgtttgacac 465  Q
    ||||||||| ||| ||||||||||||| |||||  ||||||||||||||||    
T  34544733 aactatgtagcaccaacacttctaatcaaaagtttgtctggtgtttgacac 34544783  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 2732931 - 2732996
Alignment:
Q  183 agtggaatttgaacgaaacgctattgttctgcgatacactgtttagtacagtatgttgtcaaatag 248  Q
    |||| ||||||||| || |||||||||| |||||||  || |||||||||  ||||||||||||||    
T  2732931 agtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatag 2732996  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 1912567 - 1912507
Alignment:
Q  188 aatttgaacgaaacgctattgttctgcgatacactgtttagtacagtatgttgtcaaatag 248  Q
    ||||||||| || |||||||||||||||||| ||| |||||||||   | |||||||||||    
T  1912567 aatttgaacaaatcgctattgttctgcgatatactatttagtacaaattattgtcaaatag 1912507  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 23797878 - 23797932
Alignment:
Q  252 gtgcagtggaatttgaacagaccgctaatttccactatctggaattgacaacatt 306  Q
    ||||||||||||||||| | ||  ||| |||||||||||||||||| ||||||||    
T  23797878 gtgcagtggaatttgaataaactactattttccactatctggaattaacaacatt 23797932  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 39258629 - 39258580
Alignment:
Q  183 agtggaatttgaacgaaacgctattgttctgcgatacactgtttagtaca 232  Q
    |||||||||||||| ||  | ||||||||||||||||||| |||||||||    
T  39258629 agtggaatttgaaccaattgttattgttctgcgatacactatttagtaca 39258580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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