View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_21 (Length: 563)
Name: NF17833_low_21
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 21 - 547
Target Start/End: Original strand, 13012286 - 13012813
Alignment:
| Q |
21 |
agagcttgcactggattatattgtcaattgttccagccgtgtcaccaattttaaaagccccagcttgaatgcctccgacagtggctgggccaataacaac |
120 |
Q |
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| T |
13012286 |
agagcttgcactggattatattgtcaattgttccagccgtgtcaccaattttaaaagccccagcttgaatgcctccgacagtggctgggccaataacaac |
13012385 |
T |
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| Q |
121 |
ctgccaaaccatgagcactaaaataagttttttcactttacaataaagctactaaagttgatcaatttccatttgaataaccaccttattgtttgaccgg |
220 |
Q |
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| T |
13012386 |
ctgccaaaccatgagcactaaaataagttttttcactttataataaagctactaaagttgatcaatttccatttgaataaccaccttattgtttgaccgg |
13012485 |
T |
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| Q |
221 |
gcatatgcaatcaattccttggtgtctgactcgggtaccccttcagcaataatagcaacaactctaattgtaggctgcttcaaagcagccatggatgatg |
320 |
Q |
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| T |
13012486 |
gcatatgcaatcaattccttggtgtctgactcgggtaccccttcagcaataatagcaacaactctaattgtaggctgcttcaaagcagccatggatgatg |
13012585 |
T |
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| Q |
321 |
cggcggcactgcatatagatcaacttggccttgttaaaatttgaaagatgtatatagggaaggaataaaac-aaaaaatagagactgaaaaacttaattt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
13012586 |
cggcggcactgcatatagatcaacttggccttgttaaaatttgaaacatttatatagggaaggaataaaacaaaaaaatagagactgaataacttaattt |
13012685 |
T |
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| Q |
420 |
acattgattttatgtgttttgaaacaaagacagattattgacctctaattattcgaatactgaactacaaaatctatttagctaatgaaacaaatcatgc |
519 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13012686 |
acattgattttatgtgatatgaaacaaagacagattattgacctctaattattctaatactgaactacaaaatctatttagctaatgaaacaaatcatgc |
13012785 |
T |
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| Q |
520 |
aatataccaaaatatgaaatgagatatt |
547 |
Q |
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| T |
13012786 |
aatataccaaaatatgaaatgagatatt |
13012813 |
T |
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