View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_22 (Length: 562)
Name: NF17833_low_22
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_22 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 548
Target Start/End: Original strand, 33441560 - 33442087
Alignment:
| Q |
19 |
gtttcaccatataaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttattaatcataaataac |
118 |
Q |
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|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33441560 |
gtttcaccatataaacaatttcagagtaagttgaagtgacatattatccatcagcaaataatctcaatgcctctcatgggttttattaatcataaataac |
33441659 |
T |
|
| Q |
119 |
aaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaaggtnnnnnnnnntagcctctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
33441660 |
aaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactgggaaaaaaac--agcctctc |
33441757 |
T |
|
| Q |
219 |
cttgaaacatcacacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctttggcagcagggatcgacggg |
318 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
33441758 |
cttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctttggcagcagggatcgacggg |
33441857 |
T |
|
| Q |
319 |
ggacaccactagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaacc |
418 |
Q |
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| || | ||||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441858 |
gaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaacc |
33441957 |
T |
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| Q |
419 |
atcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattata |
518 |
Q |
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| T |
33441958 |
atcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattata |
33442057 |
T |
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| Q |
519 |
attttatcttgtccactagttaacacaggt |
548 |
Q |
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| T |
33442058 |
attttgtcttgcccactggttaacacaggt |
33442087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 30 - 548
Target Start/End: Original strand, 33451791 - 33452307
Alignment:
| Q |
30 |
taaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttattaatcataaataacaaaatgatatt |
129 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33451791 |
taaacaatttcagagtaagttgaactgacatattatccatcagcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatatt |
33451890 |
T |
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| Q |
130 |
acattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaaggtnnnnnnnnntagcctctccttgaaacatc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
33451891 |
acattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactgggaaaaaaac--agcctctccttgaaacatc |
33451988 |
T |
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| Q |
230 |
acacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctttggcagcagggatcgacgggggacaccacta |
329 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || | |||| |
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| T |
33451989 |
acacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaacgctacta |
33452088 |
T |
|
| Q |
330 |
gcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttg |
429 |
Q |
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||||||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452089 |
gcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttg |
33452188 |
T |
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| Q |
430 |
gctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttatcttg |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33452189 |
gctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttgtcttg |
33452288 |
T |
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| Q |
530 |
tccactagttaacacaggt |
548 |
Q |
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| T |
33452289 |
cccactggttaacacaggt |
33452307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 406 - 553
Target Start/End: Original strand, 33399629 - 33399776
Alignment:
| Q |
406 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
505 |
Q |
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||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
33399629 |
ctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccata |
33399728 |
T |
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| Q |
506 |
ggttgtaattataattttatcttgtccactagttaacacaggttctgc |
553 |
Q |
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|||||| | | ||||||||| |||||||| |||||||| ||| |||| |
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| T |
33399729 |
ggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgc |
33399776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 393 - 544
Target Start/End: Original strand, 33395729 - 33395880
Alignment:
| Q |
393 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtacc |
492 |
Q |
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|||||||| |||||||||||||||||| ||| ||||||||| |||||||||||||||| ||| | |||||||| | | ||| ||||||||||| |
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| T |
33395729 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtacc |
33395828 |
T |
|
| Q |
493 |
atcttctcccataggttgtaattataattttatcttgtccactagttaacac |
544 |
Q |
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||||||| ||||||||||| | || |||| |||| ||||||||||||||||| |
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| T |
33395829 |
atcttcttccataggttgtcaataaaattgtatcatgtccactagttaacac |
33395880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 1483 - 1400
Alignment:
| Q |
19 |
gtttcaccatataaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttat |
104 |
Q |
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|||||||||||||| ||||| ||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1483 |
gtttcaccatataagcaatt-cag-gtaggataaactgacatattatccctcagcaaataatctcaatgcctctcatggcttttat |
1400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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