View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_24 (Length: 547)
Name: NF17833_low_24
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 34908497 - 34908210
Alignment:
| Q |
1 |
tgtagttaatggttgggatttacttcccaacctgtcatgctttttacaaaaccagttgtcattgttctataggaattacatataaatgatcaattaaaga |
100 |
Q |
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| T |
34908497 |
tgtagttaatggttgggatttacttcccaacctgtcatgctgtttacaaaaccagttgtcattgttctataggaattacatataaatgatcgattaaaga |
34908398 |
T |
|
| Q |
101 |
ttcctacgacatccaccacctccaccaagcccaagcatgttaggcagggttgtttgtgatgataaataaatttcagtaaagtacaaccatccctcctact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34908397 |
ttcctacgacatccaccacctccaccaagcccaagcctgttaggcagggttatttgtgatgataaataaatttcagtaaagtacaaccatccctcctact |
34908298 |
T |
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| Q |
201 |
agtggttaaatattaaacaagccgttgtaaaccnnnnnnntgaaaattgtttgtatgaaatatgattgtatcatttaaacattaaaaa |
288 |
Q |
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| T |
34908297 |
agtggttaaatattaaacaagccgttgtaaaccaagaaaatgaaaattgtttgtatgaaatatgattgtatcatttaaacattaaaaa |
34908210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 307 - 530
Target Start/End: Complemental strand, 34908130 - 34907907
Alignment:
| Q |
307 |
tctgagcttttgggagggttgatccttgacaaggtatcagttaaatttggcccttgttaccccattccttataataagcattaaatttgagtggctaagt |
406 |
Q |
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| T |
34908130 |
tctgagcttttgggagggttgatccttgacaaggtatcagttaaatttggcccttgctaccccattccttataataaacattaaatttgagtggctaagt |
34908031 |
T |
|
| Q |
407 |
gtatgtataaaccattccgatgtctatacctagatgactaatcctttgagttgattctttagaagtttatgtactgcattataggaaaacattagttgtg |
506 |
Q |
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| T |
34908030 |
gtatgtataaaccgttccgatgtctatacctagatgactaatcctttgagttgattatttagaagtttatgtactgcattataggaaaacattagttgtg |
34907931 |
T |
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| Q |
507 |
aggatgtctcaacttgattagtct |
530 |
Q |
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||||||| |||||||||||||||| |
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| T |
34907930 |
aggatgtttcaacttgattagtct |
34907907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 34894584 - 34894544
Alignment:
| Q |
49 |
aaaccagttgtcattgttctataggaattacatataaatga |
89 |
Q |
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|||||||||||||||||||||||| |||| | ||||||||| |
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| T |
34894584 |
aaaccagttgtcattgttctatagtaattgcctataaatga |
34894544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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