View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_low_27 (Length: 514)
Name: NF17833_low_27
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 60 - 499
Target Start/End: Complemental strand, 5393569 - 5393129
Alignment:
| Q |
60 |
ttcattatccgaatcaaaccattctgaaattgaacgg--tagtttgtgttagatccaaacttgaatgttggattgatttaagtcattggtttgaacgagt |
157 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5393569 |
ttcattatccgaaccaaaccattctgaaatcgaacggattagtttgtgttagatccaaacttgaatgttggattgatttaagtcattggtttgaacgagt |
5393470 |
T |
|
| Q |
158 |
catctagaccgtgaacaacccttccaagtaacatggctaattgatatttatgaattcaaaattcattaataagattggatagacaatataaaagcataca |
257 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5393469 |
catctaaaccgtgaacaacccttccaagtaacatggctaattgatatttatgaattcaaaattcattaataagattggatagacaatataaaagcgtaca |
5393370 |
T |
|
| Q |
258 |
agattgtactccaaggtgattaagattcatataaagaatttatctacgtcaacatatagtannnnnnnnctatagacatcagttatggatcgaaattttt |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
5393369 |
agattgtactccaaggtgattaagattcatataaataattgatctacgtcaacata-gtttttttttttctatagacatcagttatggatcgaaattttt |
5393271 |
T |
|
| Q |
358 |
ggccaaatgataagtgatttgagcatctatcacttt--cgcacaccatgttagtggagtaaatcatattctagtcttgaaatttttatggatacacttta |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
5393270 |
ggccaaatgataagtgatttgagcatctatcactttggcgcacaccatgttagtggagtaaatcatattatagtcttgaaatttttatggatacac--ta |
5393173 |
T |
|
| Q |
456 |
cattatgttgtatgatcttgtttaatcaagtttccatttctgtg |
499 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5393172 |
cattatgttgtgtgatcttgtttaatcaagtttccatttctgtg |
5393129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University