View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_3 (Length: 739)
Name: NF17833_low_3
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 667; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 17 - 730
Target Start/End: Complemental strand, 45317116 - 45316406
Alignment:
| Q |
17 |
cagaataattatataagcttgtcaccaacatttccttttaactctcttgtgtcgagaacaggatggaaaccaaggtgtggctgataccgtcccaacacct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317116 |
cagaataattatataagcttgtcaccaacatttccttttaactctcttgtgtcgagaacaggatggaaaccaaggtgtggctgataccgtcccaacacct |
45317017 |
T |
|
| Q |
117 |
atagttataattgatcaagactctgatcctgatgcaactgtcgtcgagattacctttggtgatcgccttggtgctcttcttgacaccgtaagcatttctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317016 |
atagttataattgatcaagactctgatcctgatgcaactgtcgtcgagattacctttggtgatcgccttggtgctcttcttgacaccgtaagcatttctc |
45316917 |
T |
|
| Q |
217 |
tcaataaatcaattgaatgcgtattcactgtccaatgtgtcagtttcagtctatgtcaatgtttcataatatatatcttatatttaaatgccattctgta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45316916 |
tcaataaatcaattgaatgcgtattcactgtccaatgtgtcagtttcagtctatgtcaatgtttcataatatatatcttatatttaaatgccattctgta |
45316817 |
T |
|
| Q |
317 |
tcttcnnnnnnnnnnnnnnaagaaagtatgtcgttctgtattattttaaaaaagcattgagatgtggttgaaaataaacttaaatcaaaaaatggtcttt |
416 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45316816 |
tcttcttttttttttt---aagaaagtatgtcgttctgtattattttaaaaaagcattgagatgtggttgaaaataaacttaaatcaaaaaatggtcttt |
45316720 |
T |
|
| Q |
417 |
acatgtgttgcagatgaatgcattgaaaaacttgggactgaatgttgttaaggcaagcgtgtgtctggactcttctggcaagcacaacaagttttccatc |
516 |
Q |
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| T |
45316719 |
acatgtgttgcagatgaatgcattgaaaaacttgggactgaatgttgttaaggcaagcgtgtgtctggactcttctggcaagcacaacaagttttccatc |
45316620 |
T |
|
| Q |
517 |
acaaaggcgtaagcaatattcccgtgtattgtacatgttcgttttatggatcaaggttatgattagaatgtgtagtaatttatttggagatgcattgtgg |
616 |
Q |
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| T |
45316619 |
acaaaggcgtaagcaatattcccgtgtattgtacatgttcgttttatggatcaaggttatgattagaatgtgtagtaatttatttggagatgcattgtgg |
45316520 |
T |
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| Q |
617 |
aactttgattgcagtgatacaggtagaaaagtggaagatccagagttgttagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccgg |
716 |
Q |
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| T |
45316519 |
aactttgattgcagtgatacaggtagaaaagtggaagatccagagttgttagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccgg |
45316420 |
T |
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| Q |
717 |
tacctatgcttctc |
730 |
Q |
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|||||||||||||| |
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| T |
45316419 |
tacctatgcttctc |
45316406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 625 - 718
Target Start/End: Complemental strand, 969051 - 968958
Alignment:
| Q |
625 |
ttgcagtgatacaggtagaaaagtggaagatccagagttgttagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccggta |
718 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||| ||||||||||||| |
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| T |
969051 |
ttgcagtgatactggcagaaaagtggaagatccagagttgttagaggcaattcgtttgacaattataaataatctgattcagtatcacccggta |
968958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 202
Target Start/End: Complemental strand, 970106 - 969977
Alignment:
| Q |
73 |
aacaggatggaaaccaaggtgtggctgataccgtcccaacacctatagttataattgatcaagactctgatcctgatgcaactgtcgtcgagattacctt |
172 |
Q |
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| T |
970106 |
aacagaatggaaatcaaggggagactgataccgttccgaccccaatagtcataattgaccaagacttggatccagatgcaactgtggtggagataacttt |
970007 |
T |
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| Q |
173 |
tggtgatcgccttggtgctcttcttgacac |
202 |
Q |
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| T |
970006 |
cggtgatcggcttggagctcttctcgacac |
969977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 422 - 529
Target Start/End: Complemental strand, 969899 - 969792
Alignment:
| Q |
422 |
tgttgcagatgaatgcattgaaaaacttgggactgaatgttgttaaggcaagcgtgtgtctggactcttctggcaagcacaacaagttttccatcacaaa |
521 |
Q |
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||||| |||||| ||||| ||| |||| || || ||||| || ||||||| || | ||| || ||||||||||||||||||||||||||||||||||| |
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| T |
969899 |
tgttgtagatgagagcattaaaagacttaggcctcaatgtcgtaaaggcaaatgtctttctcgattcttctggcaagcacaacaagttttccatcacaaa |
969800 |
T |
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| Q |
522 |
ggcgtaag |
529 |
Q |
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| T |
969799 |
agcgtaag |
969792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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