View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_33 (Length: 479)
Name: NF17833_low_33
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Original strand, 1923631 - 1924053
Alignment:
| Q |
17 |
tgccctctcacatttgctcaagtgttgagagaaataatatcttgactaaaattactaattagtttcagagttctcgttagatttaaatttgaataaggtt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
1923631 |
tgccctctcacatttgctcaagtgttgagagaaataatatcttgactaaaattactaattagtttcagagttctctttagatttaaatttgaataagatt |
1923730 |
T |
|
| Q |
117 |
tcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgtt----attagagatcacgtatggct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1923731 |
tcaattgttaaggataagtttatcccaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattaattagagatcacgtatggct |
1923830 |
T |
|
| Q |
213 |
cttcatcagttgagtgtctctatagtgtagacctacatggtttgtccctgaaatatagtttcaatagatttttatgcatgtcggcaagcgtaggtggata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1923831 |
cttcatcagttgagtgtctctatagtgtagacctacatggtttgtccctgaaatatagtttcaatagatttttatgcatgtcggcaagcgtaggtggata |
1923930 |
T |
|
| Q |
313 |
ttatgagatttttctgtgatgacctcttgagtaggattctcacgtttttggttatgtccttttctatatcatcaagtgtgcagtaaatatgtgtttaggt |
412 |
Q |
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| T |
1923931 |
ttatgagatttttctgtgatgacctcttga---------tcacgtttttggtgatgtccttttctagatcatcaagtgtgcagtaaatatgtgtttaggt |
1924021 |
T |
|
| Q |
413 |
ggttgggtggattcaattttactttaatattt |
444 |
Q |
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| T |
1924022 |
ggttgggtggattcaattttactttaatattt |
1924053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 17498830 - 17498947
Alignment:
| Q |
101 |
aaatttgaataaggtttcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgttattagaga |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17498830 |
aaatttgaataagatttcaattgttaaggataagtttatcacaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattagaga |
17498929 |
T |
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| Q |
201 |
tcacgtatggctcttcat |
218 |
Q |
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|||||||||||||||||| |
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| T |
17498930 |
tcacgtatggctcttcat |
17498947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 17554384 - 17554267
Alignment:
| Q |
101 |
aaatttgaataaggtttcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgttattagaga |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17554384 |
aaatttgaataagatttcaattgttaaggataagtttatcacaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattagaga |
17554285 |
T |
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| Q |
201 |
tcacgtatggctcttcat |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
17554284 |
tcacgtatggctcttcat |
17554267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 17499113 - 17499224
Alignment:
| Q |
303 |
taggtggatattatgagatttttctgtgatgacctcttgagtaggattctcacgtttttggttatgtccttttctatatcatcaagtgtgcagtaaatat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |
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| T |
17499113 |
taggtggatattatgagatttttctgtgatgacctcttgagtaggattctcacgtttttggtgatgtccttttctagatcatcaagtgtgcagtaactat |
17499212 |
T |
|
| Q |
403 |
gtgtttaggtgg |
414 |
Q |
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|||||||||||| |
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| T |
17499213 |
gtgtttaggtgg |
17499224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 303 - 414
Target Start/End: Complemental strand, 17554101 - 17553990
Alignment:
| Q |
303 |
taggtggatattatgagatttttctgtgatgacctcttgagtaggattctcacgtttttggttatgtccttttctatatcatcaagtgtgcagtaaatat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |
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| T |
17554101 |
taggtggatattatgagatttttctgtgatgacctcttgagtaggattctcacgtttttggtgatgtccttttctagatcatcaagtgtgcagtaactat |
17554002 |
T |
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| Q |
403 |
gtgtttaggtgg |
414 |
Q |
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|||||||||||| |
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| T |
17554001 |
gtgtttaggtgg |
17553990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 17498951 - 17498998
Alignment:
| Q |
247 |
acatggtttgtccctgaaatatagtttcaatagatttttatgcatgtc |
294 |
Q |
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| T |
17498951 |
acatggtttgttcctgaaatatagtttcaatagatttttatgcatgtc |
17498998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 17554263 - 17554216
Alignment:
| Q |
247 |
acatggtttgtccctgaaatatagtttcaatagatttttatgcatgtc |
294 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17554263 |
acatggtttgttcctgaaatatagtttcaatagatttttatgcatgtc |
17554216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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