View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_36 (Length: 455)
Name: NF17833_low_36
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 57 - 444
Target Start/End: Complemental strand, 33662684 - 33662295
Alignment:
| Q |
57 |
acatgagctatactatgacccttaggactatcatatccgcagaattgttgctttcattattcaaattaaggtagatatagttgtttaatgtgccccnnnn |
156 |
Q |
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| T |
33662684 |
acatgagctgtactatgacccttaggactatcatatccgcagaattgttgctttcattattcaaattaaggtagatatagttgtttaatgtaccccaaaa |
33662585 |
T |
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| Q |
157 |
nnn--gagatagttgtttatcattttttaattaatgagttgtttaaactttaacttcaaacattttagcattttatcgttagaaattcatctcttataga |
254 |
Q |
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| T |
33662584 |
aaaaagagatagttgtttatcattttttaattaatgagttgtttaaactttaacttcaaacattttagcattttatcgttagaaattcatctcttataga |
33662485 |
T |
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| Q |
255 |
taaattagtggagtgtccgagtttaaacctcgactatacatattacaatgaattgtccctatcaattagttaatatcacatcgacgaatgtcgaatttta |
354 |
Q |
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| T |
33662484 |
taaattagtggagtgtccgagttcaaacctcgactatacatattacaatgaattgtccctatcaattagttaatatcacatcgacgaatgtcgaatttta |
33662385 |
T |
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| Q |
355 |
ttgacggcaaagaagttccggaaaaaccatattcttttcttcctagaacaaattaaaatcacaaccatatgatactaaattcttattcat |
444 |
Q |
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| T |
33662384 |
ttgacggcaaagaagttccggaaaaaccatattcttttcttcctagaacaaattaaaatcacaaccatatgatactaaattcttattcat |
33662295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 33683781 - 33683731
Alignment:
| Q |
31 |
ttgtactctagagacagagtccttgtacatgagctatactatgacccttag |
81 |
Q |
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| T |
33683781 |
ttgtactctagagacagagtccttgtatatgagatgtactatgacccttag |
33683731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 33672130 - 33672083
Alignment:
| Q |
97 |
agaattgttgctttcattattcaaattaaggtagatatagttgtttaa |
144 |
Q |
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| T |
33672130 |
agaattgtttctttcattattccatttaaggtagatatagttgtttaa |
33672083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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