View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_38 (Length: 442)
Name: NF17833_low_38
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 52 - 369
Target Start/End: Complemental strand, 12676107 - 12675791
Alignment:
| Q |
52 |
tactctaccttttcttgtctgtctttctcccttttttgctactttgttgaaaaaatatcagaaagttagatccttcaactcacatggaagcacttaattc |
151 |
Q |
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| T |
12676107 |
tactctaccgtttcttgtttgtctttctcc-ttttttgctactttgttgaaaaaatatcagaaagttagatccttcaactcacatggaagcacttaattc |
12676009 |
T |
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| Q |
152 |
catattagttagggtttccaattcacccaacaaagtttggtactcatccaccaaattaaatttcgtatgtacctaagtgttcacctcaaataatactata |
251 |
Q |
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| T |
12676008 |
caaattagttagggtttctaattcacccaacaaagtttggtactcatccaccaaattaaatttcttatgtacctaagtgttcacctcaaataatactata |
12675909 |
T |
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| Q |
252 |
ccttaaataatcaaaactatttgacatctcaatcaaccatgaaatacaataaaggatcatcggagacatgattgctctacacatataggctatagcacta |
351 |
Q |
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| T |
12675908 |
ccttaaataatcaaaactatttgacatctcaatcaaccatgaaatacaataaaggatcatcggagacatgattgctctacacatataggctatagcacta |
12675809 |
T |
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| Q |
352 |
aacaatttttcattggac |
369 |
Q |
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| T |
12675808 |
aacaatttttcattggac |
12675791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 12676189 - 12676145
Alignment:
| Q |
8 |
ccaagaatatcttactcttgtggtgcaccttgatcttatcatatt |
52 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12676189 |
ccaataatatcttactcttgtggtgcaccttgatcttatcatatt |
12676145 |
T |
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