View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_39 (Length: 439)
Name: NF17833_low_39
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_39 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 11889148 - 11888877
Alignment:
| Q |
17 |
caaacaccgcataccccagcctcaacctccgggataccgaaacagccccattaaagcatgagacactctcttaggcaccaacactattcataaaacaaac |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11889148 |
caaacaccgcataccccagcctcaacctccgcgataccgaaacagccccattaaagcatgagacactctcttaggcaccaacactattcataaaacaaac |
11889049 |
T |
|
| Q |
117 |
tcgctggcaccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctccactatccccacaaattaaattgctaaaaatgcgatcatttc |
216 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
11889048 |
tcgctggtaccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctccactatccccacaaattaaattgttaaaaatgc-atcatttc |
11888950 |
T |
|
| Q |
217 |
tcgccctccaaatactcactccaaaccgcgggatgccaaatcaaccggtaccatttacaaaccttcttatttgtctt |
293 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
11888949 |
tcgccctccaaat----actccaaaccgcgggatgccaaatcaaccggtaccacttacgaaccttcttatttgtctt |
11888877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 34799998 - 34800257
Alignment:
| Q |
26 |
cataccccagcctcaacctccgggataccgaaacagccccattaaagcatgagacactctcttaggcaccaacactattcataaaacaaactcgctggca |
125 |
Q |
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|||||||||||||||| |||| | || ||| |||||||||||| |||| ||||||||||| | ||||||||| ||||||||||| || | |
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| T |
34799998 |
cataccccagcctcaaactccactaaactgaaccagccccattaacgcataagacactctctaggacaccaacaccattcataaaacc--------ggta |
34800089 |
T |
|
| Q |
126 |
ccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctccacta--tcc------ccacaaattaaattgctaaaaatgcgatcatttct |
217 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |||||| | | ||| |||| || |||||||||| |
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| T |
34800090 |
ccttcaaacgactcaacatccatctccactacaaaaccttaatcgcctccactaactccgcagctccacaagtaacattattaaagatacgatcatttcg |
34800189 |
T |
|
| Q |
218 |
cgccctccaaatactcactccaaaccgcgggatgccaaatcaaccggtaccatttacaaaccttcttatttg |
289 |
Q |
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| T |
34800190 |
caccctccaaat----actccacaccgcggcatgccaaatcaactgataccctttacgaaccttcttatttg |
34800257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 306 - 397
Target Start/End: Complemental strand, 11888813 - 11888724
Alignment:
| Q |
306 |
cgcataaatttcgatcaatgataaatattatcgaccaagtgtgctggaaattatttttctactaagatataatgaatattttcatcaaataa |
397 |
Q |
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||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11888813 |
cgcatgaatttcgatcaatgataaat--tatcgacgaagtgtgctagaaattatttttctactaagatatggtgaatattttcatcaaataa |
11888724 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 1611800 - 1611520
Alignment:
| Q |
18 |
aaacaccgcataccccagcctcaacctccgggataccgaaacagccccattaaagcatgagacactctcttaggcaccaacactattcataaaacaaact |
117 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||||||||| |||||||| | | |||||||| || | ||| ||||| |||| |||| |||||| |
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| T |
1611800 |
aaacaccacataccccagcctcaacctccgctgtaccgaaacagtcccattaacacctaagacactcgctaggacacgaacaccattcgtaaa-caaact |
1611702 |
T |
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| Q |
118 |
cgctggcaccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctccacta--------tccccacaaattaaattgctaaaaatgcga |
209 |
Q |
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||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
1611701 |
cgccggcacgttcaaacgactcaacatgcacctccacaacaaaaccttaatcgcctccactaactccgccgccccacaaattacattattaaaaatgcga |
1611602 |
T |
|
| Q |
210 |
tcatttctcgccctccaaatactcactccaaaccgcgggatgccaaatcaaccggtaccatttacaaaccttcttatttgtc |
291 |
Q |
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||||| ||| |||||||||||||| ||||||||| ||| |||||||| | |||| ||||| |||||||||||||||| |
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| T |
1611601 |
tcattcctcaccctccaaatactccaattaaaccgcggcatggcaaatcaattgataccctttacgaaccttcttatttgtc |
1611520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 5038222 - 5038065
Alignment:
| Q |
20 |
acaccgcataccccagcctcaacctccgggataccgaaacagccccattaaagcatgagacactctcttaggcaccaacactattcataaaacaaactcg |
119 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||| || || |||| | || |||||||| || ||| ||| ||| ||| ||| ||||||||| |
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| T |
5038222 |
acaccgcataccccagcctcaacctccgatcttccgaaatggctcccttaacgaatcagacactccctagggctccagcaccatttgtaatacaaactcg |
5038123 |
T |
|
| Q |
120 |
ctggcaccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctccac |
177 |
Q |
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| ||||| | || ||||||||||| ||| |||||||| |||||||||||||||||||| |
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| T |
5038122 |
ccggcacatgcatacgactcaacacccatctccacgataaaaccttaatcgcctccac |
5038065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 13725996 - 13725946
Alignment:
| Q |
131 |
aaacgactcaacatccacctccacgacaaaaccttaatcgcctccactatc |
181 |
Q |
| |
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||||||||||| |||||||||||| ||||||||||| |||||||||||| |
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| T |
13725996 |
aaacgactcaaagtccacctccacggaaaaaccttaattgcctccactatc |
13725946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 26728884 - 26728832
Alignment:
| Q |
181 |
ccccacaaattaaattgctaaaaatgcgatcatttctcgccctccaaatactc |
233 |
Q |
| |
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|||||||| || ||||| ||||||| || ||||||||||||||||| |||||| |
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| T |
26728884 |
ccccacaatttgaattgttaaaaattcgctcatttctcgccctccatatactc |
26728832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 15858697 - 15858537
Alignment:
| Q |
20 |
acaccgcataccccagcctcaacctccgggataccgaaacagcccc-attaaagcatgagacactctcttaggcaccaacactattcataaaacaaactc |
118 |
Q |
| |
|
|||||||| |||| |||||||||||||| || ||| ||||||| || ||||| | || || |||||||| | ||||||||| |||||||| |||||| | |
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|
| T |
15858697 |
acaccgcaaaccctagcctcaacctccgcgaaaccaaaacagctcctattaacgaataaggcactctctcggacaccaacaccattcataatacaaacac |
15858598 |
T |
|
| Q |
119 |
gctggcaccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctccacta |
179 |
Q |
| |
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|| ||| | |||||||| || |||||||| |||||||||| |||||| ||||||||||||| |
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| T |
15858597 |
gccggccctttcaaacggcttaacatccatctccacgacagaaccttgatcgcctccacta |
15858537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 16210415 - 16210287
Alignment:
| Q |
20 |
acaccgcataccccagcctcaacctccgggataccgaaacagccccattaaagcatgagacactctcttaggcaccaacactattcataaaacaaactcg |
119 |
Q |
| |
|
||||| ||||||||||| ||||||||| ||||||||| |||| ||||||| | || || ||||||||| ||||||||||| ||| ||||||||||||| |
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|
| T |
16210415 |
acaccacataccccagctacaacctccgcgataccgaatcagctccattaacgaataaggcactctcttgggcaccaacaccatttgtaaaacaaactcg |
16210316 |
T |
|
| Q |
120 |
ctggcaccttcaaacgactcaacatccac |
148 |
Q |
| |
|
| ||| ||| || | |||||||||||||| |
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| T |
16210315 |
ccggcccctgcataggactcaacatccac |
16210287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 10909404 - 10909483
Alignment:
| Q |
102 |
attcataaaacaaactcgctggcaccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctccactatc |
181 |
Q |
| |
|
||||||||||||| | || ||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
10909404 |
attcataaaacaagcaagccggcacttgtaaacgactcaaagtccacctccacgacaaaaccttaatcgcctccaatatc |
10909483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 16210261 - 16210213
Alignment:
| Q |
181 |
ccccacaaattaaattgctaaaaatgcgatcatttctcgccctccaaat |
229 |
Q |
| |
|
|||| |||||||||||| ||||||| || |||||||| ||||||||||| |
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|
| T |
16210261 |
ccccgcaaattaaattgttaaaaatacggtcatttctagccctccaaat |
16210213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 2734 - 2462
Alignment:
| Q |
21 |
caccgcataccccagcctcaacctccgggataccgaaacagccccattaaagcatgagacactctcttaggcaccaacactattcataaaacaaactcgc |
120 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| | || | || | || |||||||| || || |||||| |||| ||| |||||||||| |
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|
| T |
2734 |
caccgcataccccagcctcaacctccgatcttccgaaaccacaccctgaacgaatcagacactccctagggttccaacatcattcgtaatacaaactcgc |
2635 |
T |
|
| Q |
121 |
tggcaccttcaaacgactcaacatccacctccacgacaaaaccttaatcgcctc---------cactatccccacaaattaaattgctaaaaatgcgatc |
211 |
Q |
| |
|
| || |||| |||||||||| ||| |||||||| ||||||||||||||||| ||||| ||||||||||| ||| |||| |||||||| |
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|
| T |
2634 |
cgacatattcattcgactcaacacccatctccacgataaaaccttaatcgcctctaccacctccacta-ccccacaaattgtatttgtaaagatgcgatc |
2536 |
T |
|
| Q |
212 |
atttctcgccctccaaatactcactccaaaccgcgggatgccaaatcaaccggtaccatttacaaaccttcttatttg |
289 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| ||||||||||||| ||| | ||||| || |||||| |||| |
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|
| T |
2535 |
atttctcaccctccaaat----actccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatcttcttctttg |
2462 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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