View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_4 (Length: 734)
Name: NF17833_low_4
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 349
Target Start/End: Original strand, 2013661 - 2013988
Alignment:
| Q |
20 |
ttgtttgcatctcgtttccttcccgcgcttcccattatcatttctgttgaacgcaacgcaagttggtgttcttgttgtttctgatgattcattttttact |
119 |
Q |
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| T |
2013661 |
ttgtttgcatctcgtttccttcccgcgcttcccactatcatttctgttgaacgcaacgcaggttggtgttcttgttgtttctgatgattcattttttact |
2013760 |
T |
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| Q |
120 |
ctgttcttctaattttcatttccatgtctaattcctccaaacatacacctatgaaaaacctacacagacacctgacacgacactgatacttatacactga |
219 |
Q |
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| T |
2013761 |
ttgttcttctaattttcatttccatgtctaattcctccaaacatacacctatgaaaaacctacacagacacgagacacgacactgatacttatacacaga |
2013860 |
T |
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| Q |
220 |
taataatttgaagaaaaataaatgatcagaggtgttggttatatagagaggccgaccacttttgtatttaaatatgtaagttcaaatattgtatagtttt |
319 |
Q |
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| T |
2013861 |
taataatttga--aaaaaaaaatgatcagaggtgttggttatatagagaggccgaccacttttgtatttaaatatgtaagttcaaatattgtatagtttt |
2013958 |
T |
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| Q |
320 |
gtgaagttgcatgcagagtacaaagtaaca |
349 |
Q |
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| T |
2013959 |
gtgaagttgcatgcagagtacaaagtaaca |
2013988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 424 - 725
Target Start/End: Original strand, 2014054 - 2014359
Alignment:
| Q |
424 |
tctgcaacgtcttttttataattatcagatgaagttcaacacaatcgtaaacggtcattagtttcacttta-----ttacataataatttcccttctcca |
518 |
Q |
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| T |
2014054 |
tctgcaatgtcttttttataattatcagatgaagttcaacacagtcgtaaacggtcattagtttcactttaatttattacataataatttcccttctcca |
2014153 |
T |
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| Q |
519 |
atttttcgctttaaattattaggcaaataatatagagatttgctacttcttgttgcagaaaggttttttgcctatgaataatccttgatgttaactatat |
618 |
Q |
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| T |
2014154 |
atttttcgctttaaattattaggcaaataatatagagattttctacttcctgttgcagaaaggtttt-tgcctatgaataatccttgatgttaactatat |
2014252 |
T |
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| Q |
619 |
ttcttgttcatcaaggtggatatgcatgagattatttaaactttgtctatgaaagacatttttcacatagcttgttgtgttgaaactaggttgtacatga |
718 |
Q |
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| T |
2014253 |
ttcttgttcatcaaggtggatatggatgagattatttaaactttgtctatgaaagacatttttcacatagcttgttgtgttgaaactaggttgtacatga |
2014352 |
T |
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| Q |
719 |
tgatgtc |
725 |
Q |
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| T |
2014353 |
tgatgtc |
2014359 |
T |
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