View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_40 (Length: 431)
Name: NF17833_low_40
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 3 - 412
Target Start/End: Complemental strand, 41237125 - 41236718
Alignment:
| Q |
3 |
attctaccgaaagaaacacaattatttagttttctc-gatatgtatataaccttaaaacgatacgatggagtagtttattttgagtcaaaccgtataaac |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41237125 |
attctaccgaaagaaacacaattatttagttttctcagatatgtatataaccttaaaa---tacgatggagtagtttattttgagtcaaaccgtataaac |
41237029 |
T |
|
| Q |
102 |
taactttcttttcctacttcagcttactatcgtggtgctatgggcatattgctggtctatgatgttacagatgaatcttcatttaacagtaatgttttcc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41237028 |
taactttcttttcctacttcagcttactatcgtggtgctatgggcatattgctggtctatgatgttacagatgaatcttcatttaacagtaatgttttcc |
41236929 |
T |
|
| Q |
202 |
atcttgtattattttcttcaaaggttttttctcatatgcaatattcaccaaccatatgctaatttcagatatcacgaattggattcgtagcattgagcaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41236928 |
atcttgtattattttcttcaaaggttttttctcatatgcaatattcaccaaccatatgctaatttcagatatcacgaattggattcgtagcattgagcaa |
41236829 |
T |
|
| Q |
302 |
cattcttcagacaatattgtcaacaaaatactggttggcaacaaagttgacatggatgaaagcaaaagggtatgcaaacatttaggataatttcttgtca |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41236828 |
cattcttcagacaatattgtcaacaaaatactggttggcaacaaagttgacatggatgaaagcaaaagggtatgcaaacatttaggataatttcttgtca |
41236729 |
T |
|
| Q |
402 |
ctagtgctata |
412 |
Q |
| |
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||||||||||| |
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| T |
41236728 |
ctagtgctata |
41236718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 23385248 - 23385172
Alignment:
| Q |
121 |
cagcttactatcgtggtgctatgggcatattgctggtctatgatgttacagatgaatcttcatttaacagtaatgtt |
197 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |
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| T |
23385248 |
cagcttactatcgtggtgccatgggcatattgctggtctatgatgttactgatgaagcatcatttaacagtaatgtt |
23385172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 380
Target Start/End: Complemental strand, 23385061 - 23384951
Alignment:
| Q |
267 |
cagatatcacgaattggattcgtagcattgagcaacattcttcagacaatattgtcaacaaaatactggttggcaacaaagttgacatggatgaaagcaa |
366 |
Q |
| |
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||||||||| |||||||||||| | ||||||||||||| |||| || ||| || |||||||||||||| || ||||||| || ||||| |||||||| |
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| T |
23385061 |
cagatatcaggaattggattcgcaacattgagcaacatgcttcggataatgtt---aacaaaatactggtagggaacaaagcagatatggacgaaagcaa |
23384965 |
T |
|
| Q |
367 |
aagggtatgcaaac |
380 |
Q |
| |
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|||||||||||||| |
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| T |
23384964 |
aagggtatgcaaac |
23384951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 375
Target Start/End: Original strand, 40197277 - 40197382
Alignment:
| Q |
267 |
cagatatcacgaattggattcgtagcattgagcaacattcttcagacaatattgtcaacaaaatactggttggcaacaaagttgacatggatgaaagcaa |
366 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| ||| |||| |||||| || ||||| ||| |||| |||||||||| |||||||||||||||||| |
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| T |
40197277 |
cagatatcaggaattggattcgtaacattgagcagcatgcttctgacaatgtt---aacaagatattggtgggcaacaaagctgacatggatgaaagcaa |
40197373 |
T |
|
| Q |
367 |
aagggtatg |
375 |
Q |
| |
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| ||||||| |
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|
| T |
40197374 |
acgggtatg |
40197382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 372
Target Start/End: Complemental strand, 29346532 - 29346430
Alignment:
| Q |
267 |
cagatatcacgaattggattcgtagcattgagcaacattcttcagacaatattgtcaacaaaatactggttggcaacaaagttgacatggatgaaagcaa |
366 |
Q |
| |
|
|||| |||| |||||||||||| | ||||||||| ||| |||| |||||| |||||||||||| | || || ||||| | |||||||||||||||||| |
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| T |
29346532 |
cagacatcaagaattggattcgcaacattgagcagcatgcttctgacaat---gtcaacaaaatattagtggggaacaaggctgacatggatgaaagcaa |
29346436 |
T |
|
| Q |
367 |
aagggt |
372 |
Q |
| |
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|||||| |
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| T |
29346435 |
aagggt |
29346430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 52032743 - 52032803
Alignment:
| Q |
121 |
cagcttactatcgtggtgctatgggcatattgctggtctatgatgttacagatgaatcttc |
181 |
Q |
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||||||| |||||||| || ||||| || |||||||| ||||||||||| |||||| |||| |
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| T |
52032743 |
cagcttattatcgtggagccatgggtatcttgctggtttatgatgttaccgatgaagcttc |
52032803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 20686875 - 20686929
Alignment:
| Q |
326 |
aaaatactggttggcaacaaagttgacatggatgaaagcaaaagggtatgcaaac |
380 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| | |||| |||||||||| |
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|
| T |
20686875 |
aaaatactggttggaaacaaagttgatatggatgaaatctaaagtgtatgcaaac |
20686929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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