View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_low_42 (Length: 427)

Name: NF17833_low_42
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_low_42
NF17833_low_42
[»] chr4 (2 HSPs)
chr4 (118-410)||(14207342-14207634)
chr4 (7-117)||(14207185-14207295)
[»] chr2 (2 HSPs)
chr2 (118-410)||(31407560-31407852)
chr2 (7-117)||(31407403-31407513)
[»] chr8 (5 HSPs)
chr8 (300-394)||(27540659-27540753)
chr8 (21-117)||(27540448-27540544)
chr8 (180-274)||(36242937-36243031)
chr8 (300-387)||(36243401-36243489)
chr8 (328-387)||(16751660-16751719)
[»] chr3 (1 HSPs)
chr3 (300-387)||(14956438-14956526)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 118 - 410
Target Start/End: Original strand, 14207342 - 14207634
Alignment:
Q  118 aatataataaattatacaacaaataactgatgaagaatgcaagtttggtgatattatttgttaaaataaaaatgaaggatcatgcactaaaatcataaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14207342 aatataataaattatacaacaaataactgatgaagaatgcaagtttggtgatattatttgttaaaataaaaatgaaggatcatgcactaaaatcataaaa 14207441  T
Q  218 ttctcacaataaggcaatatcacttacattggagatgtcaaattcaatattttatgtcatagtttcaacaggttcgttcgtatagcaaacaccttacaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14207442 ttctcacaataaggcaatatcacttacattggagatgtcaaattcaatattttatgtcatagtttcaacaggttcgttcgtatagcaaacaccttacaaa 14207541  T
Q  318 atatgcaaactaaaatgcatcaaattcttaaagaacggttcaaggcaatttcaagtatggggttgcatagtctgttgtcagtatgaggaaacc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14207542 atatgcaaactaaaatgcatcaaattcttaaagaacggttcaaggcaatttcaagtatggggttgcatagtctgttgtcagtatgaggaaacc 14207634  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 14207185 - 14207295
Alignment:
Q  7 tagataattctgagtacaaaaaccaaaagaagcatgttagctttggcacccattgattttcattttaagaacatttgaagatatgcaatcaacaatctat 106  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14207185 tagataacactgagtacaaaaaccaaaagaagcatgttaactttggcacccattgattttcattttaagaacatttgaagataagcaatcaacaatctat 14207284  T
Q  107 gtttgattata 117  Q
    |||||||||||    
T  14207285 gtttgattata 14207295  T

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Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 118 - 410
Target Start/End: Original strand, 31407560 - 31407852
Alignment:
Q  118 aatataataaattatacaacaaataactgatgaagaatgcaagtttggtgatattatttgttaaaataaaaatgaaggatcatgcactaaaatcataaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31407560 aatataataaattatacaacaaataactgatgaagaatgcaagtttggtgatattatttgttaaaataaaaatgaaggatcatgcactaaaatcataaaa 31407659  T
Q  218 ttctcacaataaggcaatatcacttacattggagatgtcaaattcaatattttatgtcatagtttcaacaggttcgttcgtatagcaaacaccttacaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31407660 ttctcacaataaggcaatatcacttacattggagatgtcaaattcaatattttatgtcatagtttcaacaggttcgttcgtatagcaaacaccttacaaa 31407759  T
Q  318 atatgcaaactaaaatgcatcaaattcttaaagaacggttcaaggcaatttcaagtatggggttgcatagtctgttgtcagtatgaggaaacc 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31407760 atatgcaaactaaaatgcatcaaattcttaaagaacggttcaaggcaatttcaagtatggggttgcatagtctgttgtcagtatgaggaaacc 31407852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 31407403 - 31407513
Alignment:
Q  7 tagataattctgagtacaaaaaccaaaagaagcatgttagctttggcacccattgattttcattttaagaacatttgaagatatgcaatcaacaatctat 106  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31407403 tagataacactgagtacaaaaaccaaaagaagcatgttaactttggcacccattgattttcattttaagaacatttgaagataagcaatcaacaatctat 31407502  T
Q  107 gtttgattata 117  Q
    |||||||||||    
T  31407503 gtttgattata 31407513  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 27540659 - 27540753
Alignment:
Q  300 tagcaaacaccttacaaaatatgcaaactaaaatgcatcaaattcttaaagaacggttcaaggcaatttcaagtatggggttgcatagtctgttg 394  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  27540659 tagcaaacaccttataaaatatgcaaactaaaatacatcaaattcttaaagaacggtttaagacaatttcaagtatggagttgcatagtctgttg 27540753  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 27540448 - 27540544
Alignment:
Q  21 tacaaaaaccaaaagaagcatgttagctttggcacccattgattttcattttaagaacatttgaagatatgcaatcaacaatctatgtttgattata 117  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||  || ||||||||    
T  27540448 tacaaaaaccaaaagaagcatgttaactttgacacccattgattttgattttaagaacatttgaagttaagcaatcaacaatctcagtctgattata 27540544  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 36242937 - 36243031
Alignment:
Q  180 aaaataaaaatgaaggatcatgcactaaaatcataaaattctcacaataaggcaatatcacttacattggagatgtcaaattcaatattttatgt 274  Q
    ||||| |||||||| |||||||||||||||||||  ||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |||||    
T  36242937 aaaatcaaaatgaaagatcatgcactaaaatcatgcaattcgcacaataaggcagtatcacttacattggagatgtcaaattccatattgtatgt 36243031  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 36243401 - 36243489
Alignment:
Q  300 tagcaaacacctt-acaaaatatgcaaactaaaatgcatcaaattcttaaagaacggttcaaggcaatttcaagtatggggttgcatag 387  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||| |||| ||||    
T  36243401 tagcaaacacctttataaaatatgcaaactaaaatacatcaaattctttaagaacagttcaagacaatttcaagtatggtgttgaatag 36243489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 16751719 - 16751660
Alignment:
Q  328 taaaatgcatcaaattcttaaagaacggttcaaggcaatttcaagtatggggttgcatag 387  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  16751719 taaaatacatcaaattcttaaagaacggttcaagacaatttcaagtatgggattgaatag 16751660  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 14956438 - 14956526
Alignment:
Q  300 tagcaaacacctt-acaaaatatgcaaactaaaatgcatcaaattcttaaagaacggttcaaggcaatttcaagtatggggttgcatag 387  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||| ||||||| ||||    
T  14956438 tagcaaacacctttataaaatatgcaaactaaaatacatcaaattctttaagaacgattcaagacaatttcaagtacggggttgaatag 14956526  T

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