View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_43 (Length: 425)
Name: NF17833_low_43
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 4388278 - 4388658
Alignment:
| Q |
16 |
tgtgctttgtttatcgataataatcacccaagcttatgtcacataaatcttacgaaaatacttacatgcatctcaaggaaaaaacaataaagcaagtgtc |
115 |
Q |
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| T |
4388278 |
tgtgctttgtttatcgataataatcatccaagcttatgtcacataaatcttacgaaaatacttacat----ctcaaggaaaaaacaataaagcaagtgtc |
4388373 |
T |
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| Q |
116 |
actgtttcggtttactcttcatgggatctatgacttggcaaaggaagctataaggagattggatgacaaaattgttgaggaagacgactaaattgtcaat |
215 |
Q |
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| T |
4388374 |
actgtttcggtttactcttcatgggatctatgacttggcaaaggaagctataaggagattggatggcaaaattgttgaggaagacaactaaattgtcaat |
4388473 |
T |
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| Q |
216 |
taggcaaagtatgatagaaagaagagcattctacatgaaaaacatgatagaaacaccaagagtgg-ggtaaattccaagactacatgtcttttaaggatg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4388474 |
taggcaaagtatgatagaaagaagagcattctacatgaaaaacatgatagaaacaccaagagtggtggtaaattccaagactacatgtcttttaaggatg |
4388573 |
T |
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| Q |
315 |
ctttgatgagctccaatacaaatttggcgcatcatattgtaaaggaacaaaagaaggacaaaaccacttgaggagaaaggataca |
399 |
Q |
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| T |
4388574 |
ctttgatgagctccaatacaaatttggcgcatcatattgtaaaggaacaaaagaaggacaaaaccacttgaggagaaaggataca |
4388658 |
T |
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