View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_45 (Length: 418)
Name: NF17833_low_45
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_45 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 418
Target Start/End: Complemental strand, 39784266 - 39783861
Alignment:
| Q |
5 |
tatccgtttaaaactttagagtaatagaaaaggttgtctgcactagtctaacaaagtagaaattcatcatgaagagctgcaaaattaaattaaattaaat |
104 |
Q |
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| T |
39784266 |
tatccttttaaaactttagagtaatagaaaaggttgtctgc----gtctaacaaagtagaaattcatcatgaagagctgcaaaattaaattaaat----- |
39784176 |
T |
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| Q |
105 |
aatataatgtatcagatgccaagaatgagagagaatataactataatgatgttgcatcttcaagcatcctttttaaattgagtatatgaaaagaagagaa |
204 |
Q |
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| T |
39784175 |
aatataatgtatcagatgccaagaatgagagagaatataactataatgatgttgcatcttcaagcatcctttttaaattgagtatatgaaaagaagagaa |
39784076 |
T |
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| Q |
205 |
aaatgttgtcttgtgatcatacattcaaatatttcaataattgaaagaatagtttgagaaatgacatcatatacacataagagaagctattattatggta |
304 |
Q |
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| T |
39784075 |
aaatgttgccttgtgatcatacattcaaatatttcaataattgaaagaatagtttgagaaatgacatcatatacacataagagaagctattattatggta |
39783976 |
T |
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| Q |
305 |
ggaaaatactaacaggtaaagttgtcgggagata-nnnnnnnnnnnnngatgagtttcattcaaatgtggtccaaagtattggaaggagacaaattatac |
403 |
Q |
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| T |
39783975 |
ggaaaatactaacaggtaaagttgtcgggagatattttttatttttttgatgagtttcattcaaatgtggtccaaagtattggaaggagacaaattatac |
39783876 |
T |
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| Q |
404 |
taaaaggaagtagat |
418 |
Q |
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| T |
39783875 |
taaaaggaagtagat |
39783861 |
T |
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