View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_46 (Length: 416)
Name: NF17833_low_46
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 121 - 402
Target Start/End: Original strand, 28462131 - 28462414
Alignment:
| Q |
121 |
tggaaatcggaatccgaggagatggagatgatgggtgatgttgaattgtaggaggaattcatgacggccgtgtgctccttaatagaggtagaaattggaa |
220 |
Q |
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| T |
28462131 |
tggaagtcggaatccgaggaggtggagatgatgggtgatgttgaattgtaggaggaattcatgacggccgtgtgctccttaatagaggtagaaattggaa |
28462230 |
T |
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| Q |
221 |
ttcaaggatgttgagatgacggcgacagagcggggtgtatatgcaaacaccatgttcaagtaagtatatgttcgaggtgaatgttaggattagaatgaga |
320 |
Q |
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| T |
28462231 |
tttaaggatgtcgagatgacggcgacagagcgaggtgtatatgcaaacactatgttcaagtaagtatatgttcgaggtgaatgttaggattagaatgagg |
28462330 |
T |
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| Q |
321 |
catatcttgttaggttgtagtgttgtgct--tatataggccaacaaatgtggtattggattgtcaatgttttccacatacttaa |
402 |
Q |
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| T |
28462331 |
catatcttgttaggttgtagtgttgtgcttatatataggccaacaaatgtggtattggattgtcaatgttttccacatacttaa |
28462414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 28462073 - 28462161
Alignment:
| Q |
7 |
gtataaaatatataagtttactcgtagaaggtaaatgaactcacaatgatggtggatatggaagtcggaatccgaggaggtggagatga |
95 |
Q |
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| T |
28462073 |
gtataaaatatataagtttactcgtagaaggtaaatgaactcacaatgatggtggatatggaagtcggaatccgaggaggtggagatga |
28462161 |
T |
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