View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_low_47 (Length: 407)

Name: NF17833_low_47
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_low_47
NF17833_low_47
[»] chr7 (1 HSPs)
chr7 (13-387)||(31023526-31023902)
[»] chr3 (2 HSPs)
chr3 (30-116)||(35213886-35213972)
chr3 (42-108)||(20402473-20402539)
[»] chr8 (1 HSPs)
chr8 (30-113)||(43396625-43396706)
[»] chr4 (1 HSPs)
chr4 (14-98)||(7449548-7449632)
[»] chr1 (1 HSPs)
chr1 (30-98)||(48038513-48038581)


Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 31023526 - 31023902
Alignment:
Q  13 caaaggaaaaagctaatgtaaatgcaagaaaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttcacgtgttgcattaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  ||||||||||||| |||||||||||||    
T  31023526 caaaggaaaaagctaatgtaaatgcaagaaaatttattaattttgatgagatcatcaaagataaagattctaggagtggtggttcatgtgttgcattaaa 31023625  T
Q  113 aattatgccatatgaggagcccaaatcaaaacttagcgggtttaaagagaatgaca--gtttgcaagactttgaagtgagtcctaactcacaaactagag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  31023626 aattatgccatatgaggagcccaaatcaaaacttagcgggtttaaagagaatgacacagtttgcaagactttgaagtgagtcctaactcacaaactagag 31023725  T
Q  211 tgtgagataaattaggaggtaaaattcctcggtttgaacatgattttaggcatgtaaaaaaggatcttaggcacagaggaaatagtaattccattgtcac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31023726 tgtgagataaattaggaggtaaaattcctcggtttgaacatgattttaggcatgtaaaaaaggatcttaggcatagaggaaatagtaattccattgtcac 31023825  T
Q  311 aatcctggttaaaatgttttctcggtcaaagtagttaccacgttccctaaagaacaaattactttacgggctctagt 387  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  31023826 tatcctggttaaaatgttttctcggtcaaagtagttaccatgttccctaaggaacagattactttacgggctctagt 31023902  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 35213886 - 35213972
Alignment:
Q  30 gtaaatgcaagaaaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttcacgtgttgcattaaaaatt 116  Q
    ||||||||||| |||||||| ||| |||||||||||||   ||||||||||| |  |||||||| ||||  |||||||| |||||||    
T  35213886 gtaaatgcaaggaaatttataaatattgatgaggtcattttagataaagattctaggagtggtgtttcaaatgttgcataaaaaatt 35213972  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 20402473 - 20402539
Alignment:
Q  42 aaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttcacgtgttgcat 108  Q
    |||||||||||| ||| ||||||||| | | ||||||||| |  || ||||||||||||||||||||    
T  20402473 aaatttattaatattggtgaggtcattatacataaagattctaggactggtggttcacgtgttgcat 20402539  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 43396625 - 43396706
Alignment:
Q  30 gtaaatgcaagaaaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttcacgtgttgcattaaaa 113  Q
    ||||||||| | |||||||||||| |||||||||||||   ||||||| ||| |  || ||||| || ||||||||||||||||    
T  43396625 gtaaatgcaggtaaatttattaatattgatgaggtcat--tagataaatattctaggaatggtgattaacgtgttgcattaaaa 43396706  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 7449548 - 7449632
Alignment:
Q  14 aaaggaaaaagctaatgtaaatgcaagaaaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttca 98  Q
    |||||||||| || |  ||||||||||  ||||||||||| |||||||||| || | |||||| |||| |  |||||||||||||    
T  7449548 aaaggaaaaatcttaaataaatgcaagttaatttattaatattgatgaggttattatagataatgattcttggagtggtggttca 7449632  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 48038513 - 48038581
Alignment:
Q  30 gtaaatgcaagaaaatttattaattttgatgaggtcatcaaagataaagattgtgcgagtggtggttca 98  Q
    |||||| |||| ||| |||||||| ||||||||||||| | | ||||||||| |  |||||||||||||    
T  48038513 gtaaatacaagtaaacttattaatgttgatgaggtcattatatataaagattttatgagtggtggttca 48038581  T

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