View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_49 (Length: 401)
Name: NF17833_low_49
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_49 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 33441560 - 33441929
Alignment:
| Q |
19 |
gtttcaccatataaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttattaatcataaataac |
118 |
Q |
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|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33441560 |
gtttcaccatataaacaatttcagagtaagttgaagtgacatattatccatcagcaaataatctcaatgcctctcatgggttttattaatcataaataac |
33441659 |
T |
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| Q |
119 |
aaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaaggtnnnnnnnnntagcctctc |
218 |
Q |
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| T |
33441660 |
aaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactgg--gaaaaaaacagcctctc |
33441757 |
T |
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| Q |
219 |
cttgaaacatcacacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctttggcagcagggatcgacggg |
318 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
33441758 |
cttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctttggcagcagggatcgacggg |
33441857 |
T |
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| Q |
319 |
ggacaccactagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatgatgatg |
390 |
Q |
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| T |
33441858 |
gaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatg |
33441929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 390
Target Start/End: Original strand, 33451791 - 33452149
Alignment:
| Q |
30 |
taaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttattaatcataaataacaaaatgatatt |
129 |
Q |
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| T |
33451791 |
taaacaatttcagagtaagttgaactgacatattatccatcagcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatatt |
33451890 |
T |
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| Q |
130 |
acattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaaggtnnnnnnnnntagcctctccttgaaacatc |
229 |
Q |
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| T |
33451891 |
acattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactgg--gaaaaaaacagcctctccttgaaacatc |
33451988 |
T |
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| Q |
230 |
acacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctttggcagcagggatcgacgggggacaccacta |
329 |
Q |
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| T |
33451989 |
acacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaacgctacta |
33452088 |
T |
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| Q |
330 |
gcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatgatgatg |
390 |
Q |
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| T |
33452089 |
gcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatg |
33452149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 1483 - 1400
Alignment:
| Q |
19 |
gtttcaccatataaacaatttcagagtaggatgaactgacatattatccatcagcaaataatctcaatgcctctcatggcttttat |
104 |
Q |
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| T |
1483 |
gtttcaccatataagcaatt-cag-gtaggataaactgacatattatccctcagcaaataatctcaatgcctctcatggcttttat |
1400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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