View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_low_52 (Length: 396)
Name: NF17833_low_52
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 13448947 - 13449319
Alignment:
| Q |
12 |
gaatataccgattacctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctga |
111 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13448947 |
gaatataccgattacctttggcggttttccacacaaggtgatatggtgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctga |
13449046 |
T |
|
| Q |
112 |
gacataagtaaattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggcca |
211 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13449047 |
gacttaagtaaattgtttgttttgagggtttccacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggcca |
13449146 |
T |
|
| Q |
212 |
agtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagt |
311 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13449147 |
agtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagt |
13449246 |
T |
|
| Q |
312 |
gtggatcttccaagtggtggtggggtccgtagttgaagacatagattcaataccttcagggaggccgacttgt |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13449247 |
atggatcttccaagtggtggtggggtccgtagttgaagacatagattcaataccttcagggaggccgacttgt |
13449319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 22 - 384
Target Start/End: Original strand, 13440794 - 13441156
Alignment:
| Q |
22 |
attacctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagta |
121 |
Q |
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||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| || | ||| ||||| |
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| T |
13440794 |
attacctttggcggttttccgcacaaggttatacgatgaggaaaatttggaacaacaaaggaacttgaatccaaatcagaattagtatcagaatgaagta |
13440893 |
T |
|
| Q |
122 |
aattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaac |
221 |
Q |
| |
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| ||||||| || ||||| || |||||| ||||| | |||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||| | |
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| T |
13440894 |
agttgtttgcttggagggattccacgagagagacggtaaaaagtgacaatccattgaatgtgaggtttgggatctgaagcttatgcgccaagtcattagc |
13440993 |
T |
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| Q |
222 |
ccatggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagtgtggatcttc |
321 |
Q |
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|||||| || | ||||||||||||||||||||| |||||||| ||||| ||||||||| |||| | | | | |||||||| |||||| |||||||||| |
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| T |
13440994 |
ccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtggatcttc |
13441093 |
T |
|
| Q |
322 |
caagtggtggtggggtccgtagttgaagacatagattcaataccttcagggaggccgacttgt |
384 |
Q |
| |
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|||| ||| | | ||| || || ||||||||||||||||| |||||||||||| |||||||| |
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| T |
13441094 |
caagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgt |
13441156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 13455427 - 13455672
Alignment:
| Q |
21 |
gattacctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagt |
120 |
Q |
| |
|
||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| | ||| |||| |
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| T |
13455427 |
gattaactttggcggtttttcacataaggtgatatgatgaggaaaatttggaacaacaaaggtacttgaatccgaatcaaaatttgtatcagaatgaagt |
13455526 |
T |
|
| Q |
121 |
aaattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaa |
220 |
Q |
| |
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|||||||||||||||||||| | || |||||||| ||||||||||||| ||| || ||||||||||| || ||||||||||||| |||||||||||||| |
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| T |
13455527 |
aaattgtttgttttgagggtctccattagggagacggcaaaaaggcacattccgttaaatgtgatgttaggaatctgaaacttatgggccaagtcattaa |
13455626 |
T |
|
| Q |
221 |
cccatggatacgtggagtcggagatgatacaatccggtggatcatt |
266 |
Q |
| |
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||||||| || | | |||||||||||||||||| || |||||||| |
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| T |
13455627 |
cccatgggtatgcagcgtcggagatgatacaatctgggggatcatt |
13455672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 384
Target Start/End: Original strand, 13462217 - 13462340
Alignment:
| Q |
261 |
atcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagtgtggatcttccaagtggtggtggggtccgtagttgaagacatagattca |
360 |
Q |
| |
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|||||| || ||||||||| |||| ||| | | |||||||| |||||| ||||||||||||| ||||||| ||| || || ||||||||||||||| |
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| T |
13462217 |
atcattttccatgaaatcctcaatgggtccatggaggagcattgcgccatgatggatcttccaagatgtggtggagtcggtggtggaagacatagattca |
13462316 |
T |
|
| Q |
361 |
ataccttcagggaggccgacttgt |
384 |
Q |
| |
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|| || ||||| ||||| |||||| |
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| T |
13462317 |
atgccatcaggaaggccaacttgt |
13462340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 375
Target Start/End: Complemental strand, 3417112 - 3416768
Alignment:
| Q |
25 |
acctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagtaaat |
124 |
Q |
| |
|
|||||||||||||| | |||| ||||||| || ||||||| |||||||| | | ||||||||||||||||||||||||| || | |||||||| |
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| T |
3417112 |
acctttggtggtttactgcacatggtgataggaagaggaaagtttggaacgatataggaacttgaatccgaatcagaatccgta------aaaagtaaat |
3417019 |
T |
|
| Q |
125 |
tgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaaccca |
224 |
Q |
| |
|
| |||||| | |||| || || ||| |||| | ||||| | |||| ||||| |||||| || ||||| |||| ||| | |||||||||||||||||| |
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|
| T |
3417018 |
tatttgttctaagggattccatgagcaagactggaaaaacggacaaaacattgtatgtgaaattagggatttgaagcttctgggccaagtcattaaccca |
3416919 |
T |
|
| Q |
225 |
tggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagtgtggatcttccaa |
324 |
Q |
| |
|
||| || | |||||||||||||||||||| |||||||| || | |||||||||| |||| ||| | |||||||| |||||| ||| |||||||||| |
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|
| T |
3416918 |
tgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggaggagcattgcgccattgttgatcttccaa |
3416819 |
T |
|
| Q |
325 |
gtggtggtggggtccgtagttgaagacatagattcaataccttcagggagg |
375 |
Q |
| |
|
|||||| | |||| || || || || ||||||||||| |||||||||||| |
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|
| T |
3416818 |
gtggtgacgaggtcggtggtggaggatatagattcaatgccttcagggagg |
3416768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 384
Target Start/End: Original strand, 12541300 - 12541641
Alignment:
| Q |
43 |
cacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagtaaattgtttgttttgagggttt |
142 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| ||| | ||||||||||||||||||||||| | | | ||| ||||||||| || | |||| || |
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|
| T |
12541300 |
cacatggtgatacgatgaggaaaatttggaacgacatacgaacttgaatccgaatcagaatcagaattggtatgaagcaaattgttttttctaagggatt |
12541399 |
T |
|
| Q |
143 |
gcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcgga |
242 |
Q |
| |
|
|| |||||||||||||||||| | ||||||||||||||| || || | || | |||| |||||||||||| |||||| || | ||||||| |
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|
| T |
12541400 |
ccatgagggagacagcaaaaagagaggatccattgaatgtgaaattgggtacttgtagcttacgagccaagtcattaccccatgagtaagaagagtcggc |
12541499 |
T |
|
| Q |
243 |
gatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccagtgtggatcttccaagtggtggtggggtccgta |
342 |
Q |
| |
|
||||||||||| ||||||| |||| ||| ||||| |||| ||| | | |||||||| || ||| |||| || ||||||| ||| ||||||| || |
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|
| T |
12541500 |
aatgatacaatcaggtggattattcacaacaaaatcatcaatgggtccatggaggagcattgcaccattgtgaattttccaagaggtaatggggtcagtg |
12541599 |
T |
|
| Q |
343 |
gttgaagacatagattcaataccttcagggaggccgacttgt |
384 |
Q |
| |
|
|| || |||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
12541600 |
gtggaggacatagattcaatgcctttagggaggtcgacttgt |
12541641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 384
Target Start/End: Original strand, 28386099 - 28386293
Alignment:
| Q |
190 |
gggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggtt |
289 |
Q |
| |
|
||||| |||| ||| | ||||||||||||| |||||| | | |||||| | || |||||||||||||||| ||||||| ||||||||||| | || |
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|
| T |
28386099 |
gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggagtcagcaataatacaatccggtggattcttctcaacgaaatccccaaccgctt |
28386198 |
T |
|
| Q |
290 |
ctttaaggagcatcgcgccagtgtggatcttccaagtggtggtggggtccgtagttgaagacatagattcaataccttcagggaggccgacttgt |
384 |
Q |
| |
|
| || |||||||| |||||| | |||||||||||||||||| | ||||| || || || | |||||| |||| |||| ||||||| |||||||| |
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|
| T |
28386199 |
cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgt |
28386293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 12483041 - 12482964
Alignment:
| Q |
27 |
ctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
104 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||| || ||| ||||||| |||| ||||| |
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|
| T |
12483041 |
ctttggtggttttgtgcacaaggtgatatggtgaggaaaatttggaacaacgaaagaatgtgaatccaaatcggaatc |
12482964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 12589727 - 12589688
Alignment:
| Q |
46 |
aaggtgatatgatgaggaaaatttggaacaacaaaggaac |
85 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12589727 |
aaggtgatacgatgaggaaaatttggaacaacaaaggaac |
12589688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 48965939 - 48966005
Alignment:
| Q |
38 |
ttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
104 |
Q |
| |
|
||||| ||||||||||| | ||||| |||||| |||||||||| |||| ||||| ||||||||||| |
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|
| T |
48965939 |
ttccagacaaggtgatagggtgaggtaaatttcgaacaacaaatgaacccgaatctgaatcagaatc |
48966005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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