View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_56 (Length: 389)
Name: NF17833_low_56
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 42838533 - 42838905
Alignment:
| Q |
1 |
cactgggcgtgcgatggaacttggacgagaatgcttagaacgttggggatataaatgtgttgaggagatcatatgggtgaaaacaaatcaacttcagcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838533 |
cactgggcgtgcgatggaacttggacgagaatgcttagaacgttggggatataaatgtgttgaggagatcatatgggtgaaaacaaatcaacttcagcga |
42838632 |
T |
|
| Q |
101 |
ataattagaactggacgtacgggccattggcttaatcacagcaaggaacattgtcttgttgggataaagggtagtccagaggtaaacagaaacattgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838633 |
ataattagaactggacgtacgggccattggctcaatcacagcaaggaacattgtcttgttgggataaagggtagtccagaggtaaacagaaacattgaca |
42838732 |
T |
|
| Q |
201 |
ctaatgttattgtttctgaagtccgggaaacaagtcgaaagccagatgagatgtatgctttgatggagaggataagtcccggaacaagaaaggtggagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42838733 |
ctaatgttattgtttctgaagtccgggaaacaagccgaaagccagatgagatgtatgctatgatggagaggataagtcccggaacaagaaaggtggagtt |
42838832 |
T |
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| Q |
301 |
gtttgctcgcatgcacaatactcatgcagggtggatgtctcttggtaatcaattgagtggtgtaaggttagtg |
373 |
Q |
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| T |
42838833 |
gtttgctcgcatgcacaatactcatgcagggtggatgtctcttggtaatcaattgagtggtgtaaggttagtg |
42838905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 43912856 - 43912639
Alignment:
| Q |
33 |
gcttagaacgttggggatataaatgtgttgaggagatcatatgggtgaaaacaaatcaacttcagcgaataattagaactggacgtacgggccattggct |
132 |
Q |
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| T |
43912856 |
gcttagaactttggggatataaacgtgttgaggagatcatttgggtgaaaacaaatcaacttcagcgaataattagaactggacgtacgggccattggct |
43912757 |
T |
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| Q |
133 |
taatcacagcaaggaacattgtcttgttgggataaagggtagtccagaggtaaacagaaacattgacactaatgttattgtttctgaagtccgggaaaca |
232 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
43912756 |
caatcacagcaaggaacattgtctcgttgggataaagggtagtcctgaagtaaacagaaacattgacaccgatgttattgttgctgaagtccgggaaaca |
43912657 |
T |
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| Q |
233 |
agtcgaaagccagatgag |
250 |
Q |
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| T |
43912656 |
agccgaaagcccgatgag |
43912639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 43912237 - 43912154
Alignment:
| Q |
249 |
agatgtatgctttgatggagaggataagtcccggaacaagaaaggtggagttgtttgctcgcatgcacaatactcatgcagggt |
332 |
Q |
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|||||||| ||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
43912237 |
agatgtatcctttgttggagagaataagtccaagaacaagaaagctggagttgtttgctcgcatgcacaatactcatgcggggt |
43912154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 43911881 - 43911838
Alignment:
| Q |
330 |
ggtggatgtctcttggtaatcaattgagtggtgtaaggttagtg |
373 |
Q |
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| T |
43911881 |
ggtggatgtctctgggtaatcaattgagtggtgtaaggttagtg |
43911838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43913049 - 43913017
Alignment:
| Q |
1 |
cactgggcgtgcgatggaacttggacgagaatg |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43913049 |
cactgggcgtgcgatggaacttggacgagaatg |
43913017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 234
Target Start/End: Complemental strand, 8634575 - 8634374
Alignment:
| Q |
33 |
gcttagaacgttggggatataaatgtgttgaggagatcatatgggtgaaaacaaatcaacttcagcgaataattagaactggacgtacgggccattggct |
132 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||| | |||||||||||| || |||| |||||||||| || ||||||||||||||||||||| |
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| T |
8634575 |
gcttagaactttggggatataaacaagttgaggagatcattttggtgaaaacaaactaatttcaccgaataattataaatggacgtacgggccattggct |
8634476 |
T |
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| Q |
133 |
taatcacagcaaggaacattgtcttgttgggataaagggtagtccagaggtaaacagaaacattgacactaatgttattgtttctgaagtccgggaaaca |
232 |
Q |
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|||||| ||||||||||||||||| |||| | || ||| ||| || ||||||| |||||||||| || ||| ||| ||| || |||||||||||||| |
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| T |
8634475 |
caatcactgcaaggaacattgtctttttggattgaaaggtggtcttgaagtaaacaaaaacattgaccctgatgctatggttgcttaagtccgggaaaca |
8634376 |
T |
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| Q |
233 |
ag |
234 |
Q |
| |
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|| |
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| T |
8634375 |
ag |
8634374 |
T |
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