View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_58 (Length: 385)
Name: NF17833_low_58
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_58 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 20473429 - 20473781
Alignment:
| Q |
15 |
agttagaacttaagtaacaagataaacatgctcagaaagaacttttctaccaaagaatcctccttttagtggacaaaatcaggccttaatcttgtttcac |
114 |
Q |
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| T |
20473429 |
agttagaacttaagtaacaagataaacatgctcagaaagaacttttctaccaaagaatcctccttttagtagacaaaatcaggccttaatcttgtttcac |
20473528 |
T |
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| Q |
115 |
caactgcacttaaaccagacccagctgcatgtcaatccataaaagaagtcattcccatagttgcatatccaaaactaagtaactaacacaacattctttg |
214 |
Q |
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| T |
20473529 |
caactgcacctaaaccagacccagctgcatgtcaatccataaaagaagtcattcccatagttgcatatccaaaactaagtaactaacacaacattctttg |
20473628 |
T |
|
| Q |
215 |
taacaaaatcattgaaacacttc----ctaggaacagcctaaattaaaatttgaccacacctcgtaacatatatagataaattcttttataattttcggt |
310 |
Q |
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| T |
20473629 |
taacaaaatcattgaaacacttcctagctaggaacagcctaaaacaaaatttgaccacacctcgtaacatatatagacaaattcttttataatgttcagt |
20473728 |
T |
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| Q |
311 |
gaatcatggggaggtttgacgcaatggtaaagttgttgtcactaaactaaaag |
363 |
Q |
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| T |
20473729 |
gaatcaaggggaggtttggcgcaatagtaaagttgttgtcactaaactaaaag |
20473781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 27405250 - 27404977
Alignment:
| Q |
15 |
agttagaacttaagtaacaagataaacatgctcagaa--------------agaacttttctaccaaagaatcctccttttagtggacaaaatcaggcct |
100 |
Q |
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| T |
27405250 |
agttagaacttaagtaacaagataaacaagctcagaacgtcctcgtaagagagaacttgtgtaccaaggaatcctccttttagtagac-aaatcaggtgt |
27405152 |
T |
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| Q |
101 |
taatcttgtttcaccaactgcacttaaaccagacccagctgcatgtcaatccataaaagaagtcattcccatagttgcatatccaaaactaagtaactaa |
200 |
Q |
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| T |
27405151 |
taatcttgtttctccaactgcacctaaccctgacccagctgcaggtccatctaaaaaagaggtcattcccatagtcgca-----aaagcta---aaccaa |
27405060 |
T |
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| Q |
201 |
cacaacattctttgtaacaaaatcattgaaacacttcctaggaacagcctaaattaaaatttgaccacacctcgtaacatatata |
285 |
Q |
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| T |
27405059 |
cgc--cattcttcgaaacaaaatcattgaaacgcttcctaggaacagcctgaaacaaaattcgacagcacctcataacatatata |
27404977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 27426063 - 27425933
Alignment:
| Q |
48 |
agaaagaacttttctaccaaagaatcctccttttagtggacaaaatcaggccttaatcttgtttcaccaactgcacttaaaccagacccagctgcatgtc |
147 |
Q |
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| T |
27426063 |
agaaagaacttgtgtaccaaggaatcctccttttagtagacaag-tcaggcgttaatcttgtttcaccaactgcacctaaaccagacccggctgcaggcc |
27425965 |
T |
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| Q |
148 |
aatccataaaagaagtcattcccatagttgca |
179 |
Q |
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| T |
27425964 |
catctattaaagaactcattcccataggtgca |
27425933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 27426110 - 27426074
Alignment:
| Q |
15 |
agttagaacttaagtaacaagataaacatgctcagaa |
51 |
Q |
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| T |
27426110 |
agttagaacttaagtaacaagataaacaagctcagaa |
27426074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 12747 - 12830
Alignment:
| Q |
90 |
aaatcaggccttaatcttgtttcaccaactgcacttaaaccagacccagctgcatgtcaatccataaaagaagtcattcccata |
173 |
Q |
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|||||||| ||||||||| ||||||||||| || ||||||||| ||||||| | || ||||| ||||||||||||| ||||| |
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| T |
12747 |
aaatcaggtgttaatcttgcttcaccaactgaacctaaaccagaaccagctggagatccatccaaaaaagaagtcattaccata |
12830 |
T |
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