View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_65 (Length: 361)
Name: NF17833_low_65
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 4960998 - 4961335
Alignment:
| Q |
1 |
tccaaacacatagatgtatatcagaatggacaatttgtacttgaaatgccaatccaagacatacaccgactaatcagcgaagaaaacacatgtagatgga |
100 |
Q |
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| T |
4960998 |
tccaaacacatagatgtatatcagaatggacaatttgtacttgaaatgccaatccaagacatacactgactaatcaacgaagaaaacacatgtagatgga |
4961097 |
T |
|
| Q |
101 |
aaaaattgacgttgcaggttcc----tatcatattcctgccagtttccgtattcgtacatgggctataattgatccaataccttcagcgtgacttaaacg |
196 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
4961098 |
aaaaattgacggtgcaggttccgtactatcatattcctgccagtttccgtattcgtacatgggctataattgatccaataccttcggcttgacttaaacg |
4961197 |
T |
|
| Q |
197 |
tgttatacccggtgtaaattaagtcattctggattataatccgagtgagttaagtccttctgagttaattcacgttaaaagtattgagtccgagcgtgac |
296 |
Q |
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||||||| ||| ||||| |||||||| ||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4961198 |
tgttatatccgatgtaagttaagtcactctagattataatccgagtgagttaatttattctgagttaactcacgttaaaagtattgagtccgagcgtgac |
4961297 |
T |
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| Q |
297 |
ttaactcgtgtatgttctatcttagagtgacttaactc |
334 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||| |
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| T |
4961298 |
ttaactcatacatgttctatcttagagtgacttaactc |
4961335 |
T |
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