View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_66 (Length: 361)
Name: NF17833_low_66
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 51935301 - 51935632
Alignment:
| Q |
20 |
accatttcctttcttgtaagattcatgtctatgctagttgatgaagtcatgtaatgagtaaaacgattacaagggaactgtcctgcattgtatatagtga |
119 |
Q |
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| T |
51935301 |
accatttcctttcttgtaagattcatgtctatgctagttgatgaagtcatgtaatgagtaaaacgattacaagggaactgtcctgcattgtatatagtga |
51935400 |
T |
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| Q |
120 |
aatctggggtaccaaattcctctagctcttcaggtgttggtcggatgcacctgtnnnnnnnttgtcgtataattgtgcatgctaaatctagtttttaagg |
219 |
Q |
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| T |
51935401 |
aatctggggtaccaaattcctctagctcttcaggtgttggtcggatgcacctgtaaaaaaattgtcgtataattgtgcatgctaaatctagtttttaagg |
51935500 |
T |
|
| Q |
220 |
ttgcaaagaattaattggtacggcttaaaatatttgtgtgaaaaagataggtgattccattagtactcacatattatgcataaatagagaatgataagct |
319 |
Q |
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| T |
51935501 |
ttgcaaagaattaattggtacggcttaaaatatttgtgtgaaaaagataggtgattccattagtactcacatattatgcataaatagagaatgataagct |
51935600 |
T |
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| Q |
320 |
cttgcagatactattcggactttgattctgtg |
351 |
Q |
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| T |
51935601 |
cttgcagatactattcggactttgattctgtg |
51935632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 12995998 - 12996152
Alignment:
| Q |
19 |
aaccatttcctttcttgtaagattcatgtctatgctagttgatgaagtcatgtaatgagtaaaacgattacaagggaactgtcctgcattgtatatagtg |
118 |
Q |
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| T |
12995998 |
aaccatttcccttctagcaagattaagatcaatgctagtggaagatgtcatgtagtgagtgaaacggttacatggaaactttccggcattgtatatagtg |
12996097 |
T |
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| Q |
119 |
aaatctggggtaccaaattcctctagctcttcaggtgttggtcggatgcacctgt |
173 |
Q |
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| T |
12996098 |
aagtccggagtaccaaaattctccagctcttcaggactgggtcggatacacctgt |
12996152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 13070651 - 13070805
Alignment:
| Q |
19 |
aaccatttcctttcttgtaagattcatgtctatgctagttgatgaagtcatgtaatgagtaaaacgattacaagggaactgtcctgcattgtatatagtg |
118 |
Q |
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| T |
13070651 |
aaccatttcccttctagcaagattaagatcaatgctagtggaagatgtcatgtagtgagtgaaacggttacatggaaactttccggcattgtatatagtg |
13070750 |
T |
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| Q |
119 |
aaatctggggtaccaaattcctctagctcttcaggtgttggtcggatgcacctgt |
173 |
Q |
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| T |
13070751 |
aagtccggagtaccaaaattctccagctcttcaggactgggtcggatacacctgt |
13070805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 28138077 - 28138193
Alignment:
| Q |
56 |
gttgatgaagtcatgtaatgagtaaaacgattacaagggaactgtcctgcattgtatatagtgaaatctggggtaccaaattcctctagctcttcaggtg |
155 |
Q |
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| T |
28138077 |
gttgaagatgtcatgtaatgtgtataacgattacatggaaaccttcctgcattataaatagtgaaatctggtgtgccaaaattctcaagctctttaggag |
28138176 |
T |
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| Q |
156 |
ttggtcggatgcacctg |
172 |
Q |
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| T |
28138177 |
taggtcgaatgcacctg |
28138193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 28138296 - 28138358
Alignment:
| Q |
288 |
acatattatgcataaatagagaatgataagctcttgcagatactattcggactttgattctgt |
350 |
Q |
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|||| ||||||||||| || |||||||||||||| ||||| || || | |||||||||||||| |
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| T |
28138296 |
acatgttatgcataaagagtgaatgataagctctggcagagacaatcctgactttgattctgt |
28138358 |
T |
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