View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_low_67 (Length: 355)
Name: NF17833_low_67
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_67 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 2593401 - 2593725
Alignment:
| Q |
13 |
aatatcttctactttgttcatatgataatggtaaacacatcaatattannnnnnnggtaacaataaagtttgggtgagttgggttctggggattcatcag |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2593401 |
aatatcttctactttgttcttatgataatggtaaacacatcaatattatttttt-ggtaacaataaagtttgggtgagttgggttctgggggttcatcag |
2593499 |
T |
|
| Q |
113 |
gtcataacatgcctcaagactcaaagagcgcttacagaggtatttacaaatccctcatcatggaggtcatcacctcgacaacgagaatttaacccacgac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2593500 |
gtcataacatgcctcaagactcaaagagcgcttacagaggtatttacaaatcactcatcatggaggtcatcacctcgacaacgagaatttaacccacgac |
2593599 |
T |
|
| Q |
213 |
cttgcaggcgagtcaacttattaccaactgagtcaacc-ttcattgacaaatacaccaatacttaataaatctaatgatcttgtcggacttgatatctct |
311 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2593600 |
cttgcaggcgggtcaactccttaccaactgagtcaacctttcattgacaaatacaccaatacttaataaatctaatgatcttgtcggacttgatatctct |
2593699 |
T |
|
| Q |
312 |
ggatggtggtgttgaatggccgttga |
337 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2593700 |
ggatggtggtgttgaatggccgttga |
2593725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 133 - 337
Target Start/End: Original strand, 2579549 - 2579753
Alignment:
| Q |
133 |
tcaaagagcgcttacagaggtatttacaaatccctcatcatggaggtcatcacctcgacaacgagaatttaacccacgaccttgcaggcgagtcaactta |
232 |
Q |
| |
|
||||||| |||||| | | ||||||||| ||| ||||||| ||| ||| |||| |||| ||||||||||| || ||| | |||||||| ||||||||| |
|
|
| T |
2579549 |
tcaaagaacgcttataaaagtatttacagatcactcatcaaggaagtcctcacttcgagaacgagaatttgacacacaatcttgcaggtgagtcaactcc |
2579648 |
T |
|
| Q |
233 |
ttaccaactgagtcaaccttcattgacaaatacaccaatacttaataaatctaatgatcttgtcggacttgatatctctggatggtggtgttgaatggcc |
332 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
2579649 |
ttaccaattgagccaaccttcattgaaaaatacaccaatacttaataaatctgatgatcttgtcggacacaatatctctggatggcggtgttgaatggcc |
2579748 |
T |
|
| Q |
333 |
gttga |
337 |
Q |
| |
|
||||| |
|
|
| T |
2579749 |
gttga |
2579753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 25379166 - 25379112
Alignment:
| Q |
203 |
aacccacgaccttgcaggcgagtcaacttattaccaactgagtcaaccttcattg |
257 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
25379166 |
aacccacaaccttgcaggcgagtcaactccttaccaacttagcaaaccttcattg |
25379112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 28498410 - 28498446
Alignment:
| Q |
222 |
gagtcaacttattaccaactgagtcaaccttcattga |
258 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
28498410 |
gagtcaacttcttaccaactgattcaaccttcattga |
28498446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 52254618 - 52254546
Alignment:
| Q |
190 |
acaacgagaatttaacccacgaccttgcaggcgagtcaacttattaccaactgagtcaaccttcattgacaaa |
262 |
Q |
| |
|
||||||||| || ||| |||| |||||||| ||||||| | ||||||||||||| || ||||||||||||| |
|
|
| T |
52254618 |
acaacgagagttgaactcacggtcttgcaggtgagtcaattccttaccaactgagttaatcttcattgacaaa |
52254546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University