View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_69 (Length: 350)
Name: NF17833_low_69
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_69 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 29552 - 29871
Alignment:
| Q |
18 |
gttataagtgaccttgatatgtcgctgaagcagggtgaacaagtggacatgttctttttaagaaaacaataatatacttaaaaattatcatatcgtaatt |
117 |
Q |
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| T |
29552 |
gttataagtgaccttgatatgtcgctgaagcagggtgaacaagtggacatgttctttttaagaaaacaataatatacttaaaaattatcatatcgtaatt |
29651 |
T |
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| Q |
118 |
agtaatgataaatccctcgaaatgtaaaagaaatggatgaggcccactggctgtatgatcacactaccaagcatgatatcacgacacttcaaattgaagg |
217 |
Q |
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| T |
29652 |
agtaatgataaatccctcgaaatgtaaaagaaatggatgaggcccactggctgtataatcacactaccaagcatgatatcacg-cacttcaaattgaagg |
29750 |
T |
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| Q |
218 |
tgtgtccagtgtccaacatgtgtcaagtgtccaacagcgacacgacaccgccatatgtggtaacatagttattccattttcataaattattactgatggc |
317 |
Q |
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| T |
29751 |
tgtgtccagtgttcaacatgtgtc-agtgtccaacagcgacacgacaccggcatatgtggtaacatagtttttccattttcataaattattactgatggc |
29849 |
T |
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| Q |
318 |
cacgtgtgaatgtcatcttcat |
339 |
Q |
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| T |
29850 |
cacgtgtgaatgtcatgttcat |
29871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 199
Target Start/End: Original strand, 15713236 - 15713394
Alignment:
| Q |
43 |
tgaagcagggtgaacaagtggacatgttctt-tttaagaaaacaataatatacttaaaaattatcatatcgtaattagtaatg--ataaatccctcgaaa |
139 |
Q |
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| T |
15713236 |
tgaagtagggtgaacaattgtacatgttcttctttaacaaaacaataatatacataaaaattatcatattgtaattcgtaatgatataaatccctcaaaa |
15713335 |
T |
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| Q |
140 |
tgtaaaagaaatggatgaggcccactggctgtatgatcacactaccaagcatgatatcac |
199 |
Q |
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| T |
15713336 |
tgtaatagagatggatcaggtccactggctgaat-atcacaccaataagtatgatatcac |
15713394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 15713420 - 15713462
Alignment:
| Q |
200 |
gacacttcaaattgaaggtgtgtccagtgtccaacatgtgtca |
242 |
Q |
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| T |
15713420 |
gacacttcaaattgaaggtatgtccagcgtccaatatgtgtca |
15713462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 16771337 - 16771295
Alignment:
| Q |
199 |
cgacacttcaaattgaaggtgtgtccagtgtccaacatgtgtc |
241 |
Q |
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| T |
16771337 |
cgacacttctgattgaaggtgtgtccagtgttcaacatgtgtc |
16771295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 37478220 - 37478256
Alignment:
| Q |
199 |
cgacacttcaaattgaaggtgtgtccagtgtccaaca |
235 |
Q |
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| T |
37478220 |
cgacactccacattgaaggtgtgtccagtgtccaaca |
37478256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 37478527 - 37478563
Alignment:
| Q |
199 |
cgacacttcaaattgaaggtgtgtccagtgtccaaca |
235 |
Q |
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| T |
37478527 |
cgacactccacattgaaggtgtgtccagtgtccaaca |
37478563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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