View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_low_7 (Length: 679)
Name: NF17833_low_7
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_7 |
 | |
|
| [»] scaffold1840 (1 HSPs) |
| | |
|
| [»] scaffold0572 (1 HSPs) |
| | |
|
| [»] scaffold0014 (3 HSPs) |
| | |
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| [»] scaffold0654 (1 HSPs) |
| | |
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| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0308 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 18 - 664
Target Start/End: Original strand, 9656716 - 9657345
Alignment:
| Q |
18 |
agtaaattcagacctaccgacgtgtaatcactctttatgtctaatttctatgttatgttacgataggagcttttgctgctgtagtatattggaaaggaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9656716 |
agtaaattcagacctaccgacgtgtaatcactctttatgtctaatttctatgttatgttacgataggagcttttgctgctgtagtatattggaaaggaac |
9656815 |
T |
|
| Q |
118 |
attcattgttatgcgacaacgaaatgaagatgggtcaggttgtttagtagaagtctaaaaccttgcctatgacatatcttgccacttgctctttggaaag |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9656816 |
attcattgttatgcgacaacgaagtgaagatgggtcaggttgtttagtagaagtctaaaaccttgcctatgacatatcttgccacttgctctttggaaag |
9656915 |
T |
|
| Q |
218 |
gaataatctttttccaatgcatctctctgaagagattcatggcttcatccacccttttttcttgcacagtccattaattaataatgatattgtagcatcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9656916 |
gaataatctttttccaatgcatctctctgaagagattcatggcttcatccacccttttttcttgcacagtccattaattaataatgatattgtagcatcg |
9657015 |
T |
|
| Q |
318 |
aacatttggcaccactcccttctggaccacaacggtaaatatatattaatggccttgttcatcacttgattaactaaaaaataaccatccattaaagcat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9657016 |
aacatttggcaccactcccttctggaccacaacggtaa--atatattaatggccttgttcatcacttgattaactaaaaaataatcatccattaaagcat |
9657113 |
T |
|
| Q |
418 |
gataagtaacaacattcggttgtacaccttttctcatcgtcatagccaacgcacttatagcttgtttcctcttccatccttgcacaatgcatcaactagt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9657114 |
cataagtaacaacattcggttgtacaccttttctcatcgtc---------------atagcttgtttcctcttccatccttgcacaatgcatcaactagt |
9657198 |
T |
|
| Q |
518 |
ataataaaaggataaacatttggnnnnnnnnntatcccctttgcgatcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaac |
617 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9657199 |
ataataaaaggataaacatttggaaaaaaaaatatcccctttgcgatcatttcaggatatacctcctatgcatcatttacaactttatctctacacgaac |
9657298 |
T |
|
| Q |
618 |
catcaatgattgtgctatacattaccacgtcagtgttgacccatatt |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9657299 |
catcaatgattgtgctatacattaccacgtcagtgttgacccatatt |
9657345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 83 - 664
Target Start/End: Original strand, 9628269 - 9628829
Alignment:
| Q |
83 |
ggagcttttgctgctgtagtatattggaaaggaacattcattgttatgcgacaacgaaatgaagatgggtcaggttgtttagtagaagtctaaaaccttg |
182 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| || |||||||||||| ||||||| ||||||||||||| ||||||||||||||| | | |
|
|
| T |
9628269 |
ggagcttttgctgctgcagtatattggaaagaaacattcatcattgtgcgacaacgaagtgaagataggtcaggttgtttggtagaagtctaaaacttag |
9628368 |
T |
|
| Q |
183 |
cctatgacatatcttgccacttgctctttggaaaggaataatctttttccaatgcatctctctgaagagattcatggcttcatccacccttttttctt-g |
281 |
Q |
| |
|
| ||||||| |||| |||||||| ||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||||||||| || | |
|
|
| T |
9628369 |
cgtatgacaaatctagccacttg-------gaaaggaataatcttttccccatgcatctctccgaagagattcattgcttcatccaccctttttttttcg |
9628461 |
T |
|
| Q |
282 |
cacagtccattaattaataatgatattgtagcatcgaacatttggcaccactcccttctggaccacaacggtaaatatatattaatggccttgttcatca |
381 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| | |||||| ||||||||| ||| |
|
|
| T |
9628462 |
cacaatccattaattaataatgatattgtagcatcgaacatttggcaccactcccttctagatcataacggtga--gtatatttatggccttg---ctca |
9628556 |
T |
|
| Q |
382 |
cttgattaactaaaaaataaccatccattaaagcatgataagtaacaacattcggttgtacaccttttctcatcgtcatagccaacgcacttatagcttg |
481 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
9628557 |
gttgattaactaagaaataaccatccattaaagcaccataagtaacaacattcggatgtacaccttttttcatcatcatagccaacacacttatagcttg |
9628656 |
T |
|
| Q |
482 |
tttcctc-ttccatccttgcacaatgcatcaactagtataataaaaggataaacatttggnnnnnnnnntatcccctttgcgatcatttcaggatatacc |
580 |
Q |
| |
|
||||||| || | || | |||||||||||||||||||||| |||| ||| |||||| ||| ||||||| |||||| ||||||||| | |
|
|
| T |
9628657 |
tttcctcttttcgtcatagcacaatgcatcaactagtatactaaa-----aaatatttggaaaa------atctcctttgcaatcattgcaggatataac |
9628745 |
T |
|
| Q |
581 |
tcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacccatatt |
664 |
Q |
| |
|
|| || |||||||||| | ||||||| ||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
9628746 |
tcataatcatcatttacgagtttatctttacacaaactatcaattattgtcctatacattaccaagtcagtgttgacccatatt |
9628829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 335 - 664
Target Start/End: Original strand, 9648030 - 9648356
Alignment:
| Q |
335 |
ccttctggaccacaacggtaaatatatattaatggccttg-ttcatcacttgattaactaaaaaataaccatccattaaagcatgataagtaacaacatt |
433 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9648030 |
ccttctggaccacaacggtaaatatat--taatggccttggttcatcacttgattaactaaaaaataaccatccattaaagcatcataagtaacaacatt |
9648127 |
T |
|
| Q |
434 |
cggttgtacaccttttctcatcgtcatagccaacgcacttatagcttgtttcctcttccatccttgcacaatgcatcaactagtataataaaaggataaa |
533 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||| |||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
9648128 |
cggttgtacaccttttttcatcatcgtagccaacacactcacagct--tttcctcttccatccttgcacaatgcatcaactagtatactaaaagaataaa |
9648225 |
T |
|
| Q |
534 |
catttggnnnnnnnnntatcccctttgcgatcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgct |
633 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
9648226 |
catttggaagaaaaaaaatcgcctttgcaatcatttcaggatatacctcatatgcatcatttacaagtttatctctacacaaactatcaatgagtgtgct |
9648325 |
T |
|
| Q |
634 |
atacattaccacgtcagtgttgacccatatt |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9648326 |
atacattaccacgtcagtgttgacccatatt |
9648356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 216 - 661
Target Start/End: Complemental strand, 33997861 - 33997429
Alignment:
| Q |
216 |
aggaataatctttttccaatgcatctctctgaagagattcatggcttcatccaccctttttt-cttgcacagtccattaattaataatgatattgtagca |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
33997861 |
aggattaatctttttccaatgcatctctttaaagagattcatggcttcatccaccctttttttcttgcacaatccattaat----aatgatattgtagca |
33997766 |
T |
|
| Q |
315 |
tcgaacatttggcaccactcccttctggaccacaacggtaaatatatattaatggccttgttcatcacttgattaactaaaaaataaccatccattaaag |
414 |
Q |
| |
|
| |||||| ||| ||||||||| |||||||| || | ||||||| | || |||||||||| ||||||||||||| |||| |||||||||| || |
|
|
| T |
33997765 |
ccaaacattcggctccactccctcctggaccatcacattgaatatatttaaa--gccttgttca---cttgattaactaagcaatatccatccattatag |
33997671 |
T |
|
| Q |
415 |
catgataagtaacaacattcggttgtacaccttttctcatcgtcatagccaacgcacttatagcttgtttcctc-ttccatccttgcacaatgcatcaac |
513 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||| ||||| ||||||||||| | | ||||||||||||| | ||| ||||||||| | ||| ||||| |
|
|
| T |
33997670 |
caccataagtaacaacattcggttttacaccttttttcatcatcatagccaacaaattcatagcttgtttcccctttcgatccttgcatagtgcgtcaac |
33997571 |
T |
|
| Q |
514 |
tagtataataaaaggataaacatttggnnnnnnnnntatcccctttgcgatcatttcaggatatacctcctatgcatcatttacaactttatctctacac |
613 |
Q |
| |
|
|||||| |||||| |||||||||||| |||||||| || |||||||||| ||||| | || ||||| |||||| ||| || ||||| |
|
|
| T |
33997570 |
tagtatgctaaaagtataaacatttggaaaa------atccccttggcaatcatttcagaatataacctataagcatcggttacaaattttcctttacac |
33997477 |
T |
|
| Q |
614 |
aaaccatcaatgattgtgctatacattaccacgtcagtgttgacccat |
661 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
33997476 |
aaactatcaatgattgtgctatacattaccacgtcagcgttaacccat |
33997429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 9647868 - 9648025
Alignment:
| Q |
21 |
aaattcagacctaccgacgtgtaatcactctttatgtctaatttctat--gttatgttacgataggagcttttgctgctgtagtatattggaaaggaaca |
118 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||||||| ||||||||||| |
|
|
| T |
9647868 |
aaattgagacctgccgacgtttaatcactctttatgtctaatttatatctgttatgttacgataggagcttttgctgtt-tagtatacaggaaaggaaca |
9647966 |
T |
|
| Q |
119 |
ttcattgttatgcgacaacgaaatgaagatgggtcaggttgtttagtagaagtctaaaa |
177 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9647967 |
ttcatcattgtgcgacaacgaagtgaagatgggtcaggttgtttagtagaagtcgaaaa |
9648025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 658
Target Start/End: Complemental strand, 16350508 - 16350437
Alignment:
| Q |
587 |
gcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
658 |
Q |
| |
|
|||||| |||| | ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
16350508 |
gcatcagttactagtttatctttacacaaaccatcaatgattgtgctatacattaccacattggtgttgacc |
16350437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 645
Target Start/End: Complemental strand, 11990800 - 11990712
Alignment:
| Q |
557 |
tttgcgatcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattaccac |
645 |
Q |
| |
|
||||| ||||||| || ||||| ||| || |||||| |||| | ||||| | ||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
11990800 |
tttgcaatcatttgagaatataactcataggcatcaattaccaatttatgtttacacaaactatcaatgattgtgttatacattaccac |
11990712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1840 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold1840
Description:
Target: scaffold1840; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 563 - 642
Target Start/End: Complemental strand, 891 - 812
Alignment:
| Q |
563 |
atcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattac |
642 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||||||| ||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
891 |
atcatttcagaatataactcatatgcatcatttacaagtttatctttgcacaaaccatcaatgattgtactatacattac |
812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 563 - 642
Target Start/End: Complemental strand, 2713 - 2634
Alignment:
| Q |
563 |
atcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattac |
642 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||||||| ||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
2713 |
atcatttcagaatataactcatatgcatcatttacaagtttatctttgcacaaaccatcaatgattgtactatacattac |
2634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 556 - 658
Target Start/End: Complemental strand, 136863 - 136761
Alignment:
| Q |
556 |
ctttgcgatcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattaccacgtcagtgttg |
655 |
Q |
| |
|
|||||| |||||||||| ||||| ||| || |||||| |||||| ||||||| ||||||||| |||||| ||| |||||||||||||||| || |||||| |
|
|
| T |
136863 |
ctttgcaatcatttcagaatataactcataagcatcaattacaagtttatctttacacaaactatcaataattatgctatacattaccacatcggtgttg |
136764 |
T |
|
| Q |
656 |
acc |
658 |
Q |
| |
|
||| |
|
|
| T |
136763 |
acc |
136761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 563 - 658
Target Start/End: Original strand, 105255 - 105350
Alignment:
| Q |
563 |
atcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
658 |
Q |
| |
|
|||||||||| |||| ||| ||||||||| |||||| ||||||| | ||||||| |||||||| |||| ||||||||||||| | ||||||||| |
|
|
| T |
105255 |
atcatttcagagtataactcatatgcatcacttacaagtttatctttgcacaaactatcaatgactgtgttatacattaccacattggtgttgacc |
105350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 656
Target Start/End: Complemental strand, 139787 - 139687
Alignment:
| Q |
556 |
ctttgcgatcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattaccacgtcagtgttg |
655 |
Q |
| |
|
|||||| |||||||||| ||||| | | || |||||| ||| | ||||||| ||||||||| |||||||||||| ||| ||||||||| | ||||||| |
|
|
| T |
139787 |
ctttgcaatcatttcagaatataacccataggcatcaagtaccaatttatctttacacaaactatcaatgattgtattatgcattaccacattagtgttg |
139688 |
T |
|
| Q |
656 |
a |
656 |
Q |
| |
|
| |
|
|
| T |
139687 |
a |
139687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 658
Target Start/End: Original strand, 13905115 - 13905210
Alignment:
| Q |
563 |
atcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
658 |
Q |
| |
|
|||||||||| ||||| ||| || |||||||||||| |||||| | ||||||||| ||| ||||||| | ||||||||||||| || ||||||||| |
|
|
| T |
13905115 |
atcatttcagaatataactcataggcatcatttacatctttatttttacacaaactatcgatgattgcggtatacattaccacatcggtgttgacc |
13905210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 658
Target Start/End: Original strand, 15715504 - 15715599
Alignment:
| Q |
563 |
atcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
658 |
Q |
| |
|
|||||||||| ||||| ||| || |||||||||||| |||||| | ||||||||| ||| ||||||| | ||||||||||||| || ||||||||| |
|
|
| T |
15715504 |
atcatttcagaatataactcataggcatcatttacatctttatttttacacaaactatcgatgattgcggtatacattaccacatcggtgttgacc |
15715599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 587 - 658
Target Start/End: Original strand, 16702559 - 16702630
Alignment:
| Q |
587 |
gcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
658 |
Q |
| |
|
|||||| |||| | ||||||| |||||||||||||||||| ||| |||||||||||||| | ||||||||| |
|
|
| T |
16702559 |
gcatcaattactagtttatctttacacaaaccatcaatgactgtactatacattaccacattggtgttgacc |
16702630 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 29348676 - 29348735
Alignment:
| Q |
216 |
aggaataatctttttccaatgcatctctctgaagagattcatggcttcatccaccctttt |
275 |
Q |
| |
|
||||||||| ||||| |||||||| ||| | |||||||||||||||||||| ||| |||| |
|
|
| T |
29348676 |
aggaataatgtttttgcaatgcatttctttaaagagattcatggcttcatcaaccttttt |
29348735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 29889651 - 29889601
Alignment:
| Q |
216 |
aggaataatctttttccaatgcatctctctgaagagattcatggcttcatc |
266 |
Q |
| |
|
||||||||| ||||| |||||||| ||| | |||||||||||||||||||| |
|
|
| T |
29889651 |
aggaataatgtttttgcaatgcatttctttaaagagattcatggcttcatc |
29889601 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 642
Target Start/End: Complemental strand, 41315751 - 41315672
Alignment:
| Q |
563 |
atcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattac |
642 |
Q |
| |
|
|||||||||| ||||| ||| || ||||||||||||| |||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
41315751 |
atcatttcagaatataactcataagcatcatttacaagcttatctttacacaaaccatcaattattgtgttatacattac |
41315672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 596 - 642
Target Start/End: Complemental strand, 15603042 - 15602996
Alignment:
| Q |
596 |
acaactttatctctacacaaaccatcaatgattgtgctatacattac |
642 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
15603042 |
acaaatttatctttacacaaactatcaatgattgtgttatacattac |
15602996 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 17251071 - 17251021
Alignment:
| Q |
387 |
ttaactaaaaaataaccatccattaaagcatgataagtaacaacattcggt |
437 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| |||||||| ||||| |||| |
|
|
| T |
17251071 |
ttaactaaaaaatatccatccatcaaagcattataagtaaaaacatccggt |
17251021 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 654
Target Start/End: Original strand, 1775 - 1828
Alignment:
| Q |
601 |
tttatctctacacaaaccatcaatgattgtgctatacattaccacgtcagtgtt |
654 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1775 |
tttatctttacacaaactatcaatgattgtgctatacattaccacatcagtgtt |
1828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 609 - 654
Target Start/End: Original strand, 51067 - 51112
Alignment:
| Q |
609 |
tacacaaaccatcaatgattgtgctatacattaccacgtcagtgtt |
654 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51067 |
tacacaaactatcaatgattgtgctatacattaccacatcagtgtt |
51112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 658
Target Start/End: Complemental strand, 26790 - 26741
Alignment:
| Q |
609 |
tacacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
658 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
26790 |
tacacaaactatcaatgattgtgctatacattaccacattggtgttgacc |
26741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 658
Target Start/End: Complemental strand, 8477 - 8382
Alignment:
| Q |
563 |
atcatttcaggatatacctcctatgcatcatttacaactttatctctacacaaaccatcaatgattgtgctatacattaccacgtcagtgttgacc |
658 |
Q |
| |
|
|||||||||| ||||| ||| ||||| || | || | ||| ||| ||||||||| ||| ||||||||| ||||||||||||| || ||||||||| |
|
|
| T |
8477 |
atcatttcagaatataactcatatgcctcggtcaccaatttctctttacacaaactatcgatgattgtgttatacattaccacatcggtgttgacc |
8382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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