View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_71 (Length: 345)
Name: NF17833_low_71
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 48296520 - 48296742
Alignment:
| Q |
18 |
gaaggaatatcattggttacacaaccatagtcataatgaaaacaaatattgaaaattttaatcacacattagcaatagttagttttattctcacttctca |
117 |
Q |
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| T |
48296520 |
gaaggaatatcattggttacacaatcatagtcataatgaaaacaaatattgaatattttaatcacacattagcaatagttagttttattttcacttctca |
48296619 |
T |
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| Q |
118 |
ttatttatccttatatattttcataaaataaactatgtgatttatatgtaaatcagtgttgtaacttgtaggctcttacttccatatgttttgatcgagt |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48296620 |
ttatttatccttatctattttcataaaataaactatgtgatttatatgtaaatcagtgttgtaacttgtaggctcttacttacatatgttttgatcgagt |
48296719 |
T |
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| Q |
218 |
attatagtaaacaaaattagcaa |
240 |
Q |
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|||||| |||||||||||||||| |
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| T |
48296720 |
attataataaacaaaattagcaa |
48296742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 238 - 327
Target Start/End: Original strand, 48296789 - 48296878
Alignment:
| Q |
238 |
caagtccatgtaaattttattacttttgcatgttcccttcttacccaatcctactaagcatacttcaaacacatgccttgtcctactgtc |
327 |
Q |
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| T |
48296789 |
caagtccatgtaaattttattacttttgcatgttcccttcttacccaattctactaagcatacttcaaacacatgccttgtcctactgtc |
48296878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 4114450 - 4114535
Alignment:
| Q |
18 |
gaaggaatatcattggttacacaaccatagtcataatgaaaacaaatattgaaaattttaatcacacattagcaatagttagtttt |
103 |
Q |
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|||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
4114450 |
gaagcaatatcattggttacacaatcataatcatatagaaaacaaatattgaaaattttaatcacacattagcattagttaatttt |
4114535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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