View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_73 (Length: 337)
Name: NF17833_low_73
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_73 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 793963 - 794285
Alignment:
| Q |
14 |
atatgaacctttaaaatatggtctaaaagtatacatttaccatttttagtnnnnnnnctatttttacaataatttaaaatggaggaatataagtgtgaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
793963 |
atatgaacctttaaaatatggtctaaaagtatacatttaccatttttagtaaaaaaa-tatttttacaataatttaaaatggaggaatataagtgtgaaa |
794061 |
T |
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| Q |
114 |
tttgccttaaaagtaattatttagactacaataataaaatgagttaaaaatgatatgaatgatatcaatgagacatatttaaattttataaacctcattt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
794062 |
tttgccttaaaagtaattatttagactacaataataaaatgagttaaaaatgagatgaatgatatcaatgagacatatttaaattttataaacctcattt |
794161 |
T |
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| Q |
214 |
aatatggccctattaaaagtgaaatcaaataaacaaattttgagccatatatccatgttaaatacatgacaaatgacaaagatggtggcatacatctaaa |
313 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
794162 |
aatatggccctattaaaagtgaaaccaaatgaacaaattttgagccatatatccatgttaaatacatgacaaatgacaaagatggtggcatacaactaaa |
794261 |
T |
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| Q |
314 |
aatatatatggagcaaatgtgatc |
337 |
Q |
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| T |
794262 |
aatatatatggagcaaatgtgatc |
794285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 4055662 - 4055833
Alignment:
| Q |
14 |
atatgaacctttaaaatatggtctaaaagtatacatttaccatttttagtnnnnnnnctatttttacaataatttaaaatggaggaatataagtgtgaaa |
113 |
Q |
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| T |
4055662 |
atatgaacctttaaaatatggtctaaaagtatacatttaccatttttagtaaaaaaactatttttacaataatttaaaatggaggaatataagtgtgaaa |
4055761 |
T |
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| Q |
114 |
tttgccttaaaagtaattatttagactacaataataaaatgagttaaaaatgatatgaatgatatcaatgaga |
186 |
Q |
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| T |
4055762 |
tttgccttaaa-gtaattatttagactacaataataaaatgagttaaaaatgatatgaatgatatcaatgaga |
4055833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 25068145 - 25067974
Alignment:
| Q |
14 |
atatgaacctttaaaatatggtctaaaagtatacatttaccatttttagtnnnnnnnctatttttacaataatttaaaatggaggaatataagtgtgaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25068145 |
atatgaacctttaaaatatggtctaaaagtatacatttaccatttttagtaaaaaaactatttttacaataatttaaaatggaggaatataagtgtgaaa |
25068046 |
T |
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| Q |
114 |
tttgccttaaaagtaattatttagactacaataataaaatgagttaaaaatgatatgaatgatatcaatgaga |
186 |
Q |
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| T |
25068045 |
tttgccttaaa-gtaattatttagactacaataataaaatgagttaaaaatgatatgaatgatatcaatgaga |
25067974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 135 - 269
Target Start/End: Original strand, 12576001 - 12576135
Alignment:
| Q |
135 |
tagactacaataataaaatgagttaaaaatgatatgaatgatatcaatgagacatatttaaattttataaacctcatttaatatggccctattaaaagtg |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12576001 |
tagactacaataataaaatgagttaaaaatgatatgaatgatattaatgagacatatttaaattttataaacctcatttaatatggccctattaaaagtg |
12576100 |
T |
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| Q |
235 |
aaatcaaataaacaaattttgagccatatatccat |
269 |
Q |
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| T |
12576101 |
aaaccaaataaacaaattttgagccatatatccat |
12576135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 12525906 - 12525963
Alignment:
| Q |
83 |
taatttaaaatggaggaatataagtgtgaaatttgccttaaaagtaattatttagact |
140 |
Q |
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| T |
12525906 |
taatttaaaatggaggaatataagtgtgaaatttgccttaaaagtaattatttagact |
12525963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 12525646 - 12525718
Alignment:
| Q |
18 |
gaacctttaaaatatggtctaaaagtatacatttaccatttttagtnnnnnnnctatttttacaataatttaaa |
91 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
12525646 |
gaacctttaaaatatggtctaaaagtatacatttatcatttttagt-aaaaaactatttttacaataatttaaa |
12525718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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