View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_75 (Length: 333)
Name: NF17833_low_75
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 27763157 - 27763462
Alignment:
| Q |
16 |
ctttcatcatcatgcaatgagttttcaaattcaaacttcattatctatgacacaatttctgcaacttcatttagtagtaacctaattgatactacaaatg |
115 |
Q |
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| T |
27763157 |
ctttcatcatcatgcaatgagttttcaaattcaaacttcattatctatgacacaatttctgcaacttcatttagtagtaaccttattgatactacaaatg |
27763256 |
T |
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| Q |
116 |
agtctagtttcttggaaaatacaatgaactatgatcatgaacaagcacatcatgaagcagatgctgcaatatttgatcaaagtaactgttctatgatgaa |
215 |
Q |
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| T |
27763257 |
agtctagtttcttggaaaatacaatgaactatgatcatgaacaagcacatcatgaagcagatgctgcaatatttgatcaaagtaactgttctatgatgaa |
27763356 |
T |
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| Q |
216 |
tagtagaaaaagacaatctatggaacaagaagaaacaatgaataatcctcaagtggtgcaaaggaaaaagaggagaagaaaaccaagagtttgtaagaac |
315 |
Q |
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| T |
27763357 |
tagtagaaaaagacaatctatggaacaagaagaaacaatgaataatcctcaagtggtgcaaaggaaaaagaggaggagaaaaccaagagtttgtaagaac |
27763456 |
T |
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| Q |
316 |
aaagaa |
321 |
Q |
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|||||| |
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| T |
27763457 |
aaagaa |
27763462 |
T |
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