View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_80 (Length: 323)
Name: NF17833_low_80
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_80 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 18803411 - 18803729
Alignment:
| Q |
1 |
aaacatattacatcattgatttttaagaattaagcatctaataaagattttaatttatgaatctctagctaatatttgtttgcaagtttttgtctagtac |
100 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18803411 |
aaacatattacatcattgattttta----ttaagcatccaataaagattttaatttatgaatctctagctaatatttgtttgcaagtttttgtctagtac |
18803506 |
T |
|
| Q |
101 |
agggtgttaaccatttttacatcttcataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18803507 |
agggtgttaaccatttttacatcttcataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatat |
18803606 |
T |
|
| Q |
201 |
tgccaagtaatagaaagtgttcaatttagttaccacattatagagcttcaactagttgaatcttccatatactaataacaactctaacaaagtaaaaaca |
300 |
Q |
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|||||||||||||||| ||| |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18803607 |
tgccaagtaatagaaaaagtttaatttagtgaccacattaaagagcttcaatcagttgaatcttccatatactaataacaactctaacaaagtaaaaaca |
18803706 |
T |
|
| Q |
301 |
tgcagaaggaaaacttagtggcg |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
18803707 |
tgcagaaggaaaacttagtggcg |
18803729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 42167958 - 42167897
Alignment:
| Q |
129 |
aggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgg |
190 |
Q |
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| T |
42167958 |
aggaagatgttggcatcatgaggaatatgaatttagatgcttacagattctcaatctcttgg |
42167897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 42289974 - 42290035
Alignment:
| Q |
129 |
aggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgg |
190 |
Q |
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| T |
42289974 |
aggaagatgttggcatcatgaagaatatgaatttggatgcctacagattctcgatctcttgg |
42290035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 107 - 233
Target Start/End: Complemental strand, 4600985 - 4600859
Alignment:
| Q |
107 |
ttaaccatttttacatcttcataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaa |
206 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| |
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| T |
4600985 |
ttaaccatttttacatcttaataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttggccaaggatattgccaa |
4600886 |
T |
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| Q |
207 |
gtaatagaaagtgttcaatttagttac |
233 |
Q |
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|||||||||| |||| ||||||||||| |
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| T |
4600885 |
gtaatagaaaatgtttaatttagttac |
4600859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 87 - 291
Target Start/End: Complemental strand, 4625152 - 4624950
Alignment:
| Q |
87 |
tttttgtctagtacagggtgttaaccatttttacatcttcataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctc |
186 |
Q |
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||||||||||||| | | ||||||||||| ||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
4625152 |
tttttgtctagtatatg-tgttaaccattgttacatcttaacaggaagatgttcaaatcatgaagaatatgaatacagatgcatacagattctccatatc |
4625054 |
T |
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| Q |
187 |
ttgggcgaggatattgccaagtaatagaaagtgttcaatttagttaccacattatagagcttcaactagttgaatcttccatatactaataacaactcta |
286 |
Q |
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|||| | |||||| | |||||||||||||| |||| ||||| ||||| ||||| ||| |||||||||||| || |||||||||| | ||||||||||| |
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| T |
4625053 |
ttggccaaggatagttccaagtaatagaaaatgtttaatttggttacatcattaatgagtttcaactagttgtattttccatatac-actaacaactcta |
4624955 |
T |
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| Q |
287 |
acaaa |
291 |
Q |
| |
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||||| |
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| T |
4624954 |
acaaa |
4624950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 25039469 - 25039365
Alignment:
| Q |
108 |
taaccatttttacatcttcataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaag |
207 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
25039469 |
taaccatttttacatcttaataggaggatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttggccaagaatattgccaag |
25039370 |
T |
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| Q |
208 |
taata |
212 |
Q |
| |
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||||| |
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| T |
25039369 |
taata |
25039365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 25018353 - 25018254
Alignment:
| Q |
113 |
atttttacatcttcataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaagtaata |
212 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| |
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| T |
25018353 |
atttttacatcttaataggaagatgtcgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttggccaagaatattgccaagtaata |
25018254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 25047339 - 25047277
Alignment:
| Q |
128 |
taggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgg |
190 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||| || ||||||||||| |||||| |
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| T |
25047339 |
taggaagatgttggaatcatgaagtatatgaatatggatgcttatagattctccatttcttgg |
25047277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 4625215 - 4625156
Alignment:
| Q |
8 |
ttacatcattgatttttaagaattaagcatctaataaagattttaatttatgaatctcta |
67 |
Q |
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||||||||||||| |||||||||| | |||| | || |||||||| |||||||||||||| |
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| T |
4625215 |
ttacatcattgatgtttaagaattcaacatcaattatagattttactttatgaatctcta |
4625156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 30360258 - 30360315
Alignment:
| Q |
129 |
aggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctc |
186 |
Q |
| |
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|||||||||||| |||||||||||||||||| ||||||||| ||||| |||||||| |
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|
| T |
30360258 |
aggaagatgttgggatcatgaagtatatgaatttagatgcatatagattatccatctc |
30360315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 29405630 - 29405711
Alignment:
| Q |
129 |
aggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaagtaa |
210 |
Q |
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|||||||||| | ||||||||| | ||||| | ||||| ||||||||||| ||||||||| | || |||||||||||||| |
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| T |
29405630 |
aggaagatgtcgagatcatgaaggacatgaacatggatgcttacagattctcaatctcttggtcaagaatattgccaagtaa |
29405711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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