View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_low_82 (Length: 317)

Name: NF17833_low_82
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_low_82
NF17833_low_82
[»] chr3 (10 HSPs)
chr3 (125-291)||(6943234-6943408)
chr3 (51-183)||(6787326-6787458)
chr3 (125-198)||(6940139-6940212)
chr3 (19-93)||(6943404-6943478)
chr3 (31-124)||(6859391-6859485)
chr3 (37-93)||(6940208-6940263)
chr3 (25-75)||(6138905-6138955)
chr3 (25-75)||(6234011-6234061)
chr3 (36-77)||(6164220-6164261)
chr3 (219-256)||(6940106-6940143)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 125 - 291
Target Start/End: Complemental strand, 6943408 - 6943234
Alignment:
Q  125 agcttcttctgtttgctaacctcccggacgtttatggaaaatccaatacctttacatgaatgcccgtaaatatcaagaggtaagtttcaatcatttatcc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| ||||| ||||||||||||||||||| |||     
T  6943408 agcttcttctgtttgctaacctcccggacgtttatggaaaatccaatacctcttcatgaatgcctgtaattatcatgaggtaagtttcaatcattaatct 6943309  T
Q  225 cttggagacttggctaattgctgcacagttttt--------acatggatctttgtatggttgtaacttaatgcat 291  Q
    ||||||||||| |||||||||||||||||||||        | ||||||||||||||||||| ||||||||||||    
T  6943308 cttggagacttagctaattgctgcacagtttttaaaaattgatatggatctttgtatggttgaaacttaatgcat 6943234  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 51 - 183
Target Start/End: Original strand, 6787326 - 6787458
Alignment:
Q  51 aaggagagattgcagctgaagaacaaagtaactgcaagagcttgtcttgacttaacagccaagttttcaaaatcagcttcttctgtttgctaacctcccg 150  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||| || |||||||||||||||||    
T  6787326 aaggatagattgcagctgaagaacaaagtaactgcaagagcatgtcctgtcttaacaaccaagttttcaaaatcagcttgttttgtttgctaacctcccg 6787425  T
Q  151 gacgtttatggaaaatccaatacctttacatga 183  Q
    ||||||||||||| ||||||| ||||| |||||    
T  6787426 gacgtttatggaatatccaattccttttcatga 6787458  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 6940212 - 6940139
Alignment:
Q  125 agcttcttctgtttgctaacctcccggacgtttatggaaaatccaatacctttacatgaatgcccgtaaatatc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||    
T  6940212 agcttcttctgtttgctaacctcccggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatc 6940139  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 6943478 - 6943404
Alignment:
Q  19 gagacactcccaaccaattcatcatcagtggcaaggagagattgcagctgaagaacaaagtaactgcaagagctt 93  Q
    ||||| ||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||    
T  6943478 gagaccctctcaaccatttcatcatcagtgtcaaggagagattgcatctcaagaacaaagtaactgcaagagctt 6943404  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 6859391 - 6859485
Alignment:
Q  31 accaattcatcatcagtggcaaggagagattgcagctgaagaaca-aagtaactgcaagagcttgtcttgacttaacagccaagttttcaaaatc 124  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||| ||| || ||||| ||| | || || ||| |||| |||||||||||||||    
T  6859391 accatttcatcatcagtagcaaggagagaatgcagctgaagaacagaagaaattgcaacagcatctcctgtcttgacaggcaagttttcaaaatc 6859485  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 6940263 - 6940208
Alignment:
Q  37 tcatcatcagtggcaaggagagattgcagctgaagaacaaagtaactgcaagagctt 93  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||||    
T  6940263 tcatcatcagtgtcaaggagagattgcatctgaagaac-aagtaactgaaagagctt 6940208  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 6138955 - 6138905
Alignment:
Q  25 ctcccaaccaattcatcatcagtggcaaggagagattgcagctgaagaaca 75  Q
    |||||| ||| ||||||||||||||  |||||||| |||||||||||||||    
T  6138955 ctcccagccatttcatcatcagtggtgaggagagaatgcagctgaagaaca 6138905  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 6234061 - 6234011
Alignment:
Q  25 ctcccaaccaattcatcatcagtggcaaggagagattgcagctgaagaaca 75  Q
    |||||| ||| ||||||||||| ||| |||||||| |||||||||||||||    
T  6234061 ctcccagccatttcatcatcagcggcgaggagagaatgcagctgaagaaca 6234011  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 6164261 - 6164220
Alignment:
Q  36 ttcatcatcagtggcaaggagagattgcagctgaagaacaaa 77  Q
    |||||| |||||||| |||||||| |||||||||||||||||    
T  6164261 ttcatcgtcagtggcgaggagagaatgcagctgaagaacaaa 6164220  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 6940143 - 6940106
Alignment:
Q  219 ttatcccttggagacttggctaattgctgcacagtttt 256  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  6940143 ttatctcttggagacttagctaattgctgcacagtttt 6940106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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