View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_86 (Length: 299)
Name: NF17833_low_86
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_86 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 5580794 - 5580532
Alignment:
| Q |
19 |
tgtgtccttcaactccattgtttttcaataccctttatgatccttttagagaaggtgctgattttgttcgtggatacccttttagtcttcgtgaaggtgt |
118 |
Q |
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| T |
5580794 |
tgtgtccatcaactccattgtttttcaataccctttatgatccttttagagaaggtgctgattttgttcgtggatacccttttagtcttcgtgaaggtgt |
5580695 |
T |
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| Q |
119 |
cccaacagctatttctcatggactttggctcaacatcccagattatgatgctcctactcagcttgtcaagcctcttgagaggaacactaggtatgtacta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5580694 |
cccaacagctatttctcatggactttggctcaacatcccagattatgatgctcctactcagcttgtcaagcctcttgagaggaacactaggtatgtacta |
5580595 |
T |
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| Q |
219 |
tgtaacatgtacaatatagttttaaatagcggtcacggtaacagtaatggtcacctcacgatc |
281 |
Q |
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| T |
5580594 |
tgtaacatgtacaatatagttttaaatagcggtcacggtaacagtaatggtcgcctcacgatc |
5580532 |
T |
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Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 25634045 - 25633860
Alignment:
| Q |
27 |
tcaactccattgtttttcaataccctttatgatccttttagagaaggtgctgattttgttcgtggatacccttttagtcttcgtgaaggtgtcccaacag |
126 |
Q |
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| T |
25634045 |
tcaaccccatttttcttcaacactctatatgacccatatagagaaggtgcagattttgttcgcggctatccgttcagtcttcgagagggtgtcccaactg |
25633946 |
T |
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| Q |
127 |
ctatttctcatggactttggctcaacatcccagattatgatgctcctactcagcttgtcaagcctcttgagaggaacactaggtat |
212 |
Q |
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| T |
25633945 |
ctatttctcatggcctttggctcaacattcctgattatgatgctccaactcagcttgtcaagcctcttgaaaggaacactaggtat |
25633860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 20178070 - 20178255
Alignment:
| Q |
30 |
actccattgtttttcaataccctttatgatccttttagagaaggtgctgattttgttcgtggatacccttttagtcttcgtgaaggtgtcccaacagcta |
129 |
Q |
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| T |
20178070 |
actccatttttcttcaacaccctttacgatccatacagagacggtgccgatttcgtccgtggataccctttcagtcttcgtgaaggtgtccccactgccg |
20178169 |
T |
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| Q |
130 |
tttctcatggactttggctcaacatcccagattatgatgctcctactcagcttgtcaagcctcttgagaggaacactaggtatgta |
215 |
Q |
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| T |
20178170 |
tttctcacggtctttggctcaacatacctgattatgatgctccaacacagcttgtcaagccccatgagaggaacactaggtgtgta |
20178255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 5018532 - 5018387
Alignment:
| Q |
66 |
agagaaggtgctgattttgttcgtggatacccttttagtcttcgtgaaggtgtcccaacagctatttctcatggactttggctcaacatcccagattatg |
165 |
Q |
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||||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| ||||| ||| ||||||| || ||||||||||| ||||| || |||| |
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| T |
5018532 |
agagaaggtgcagatttcgttcgtggctaccccttcagtctccgtgaaggtgtaccaactgctgtttctcacggcctttggctcaatatccctgactatg |
5018433 |
T |
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| Q |
166 |
atgctcctactcagcttgtcaagcctcttgagaggaacactaggta |
211 |
Q |
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| T |
5018432 |
atgctcctactcagcttgtgaagcctcttgaaaggaacactaggta |
5018387 |
T |
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