View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17833_low_89 (Length: 292)
Name: NF17833_low_89
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_89 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 3375846 - 3376109
Alignment:
| Q |
13 |
gagagagtttccattgaagtttcgtttgttgaaaagagagagtgtacgtgtgtgttattttatcatagcatatattattcaaccattttctctaactcat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| || |||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
3375846 |
gagagagtttccattgaagtttcgtttgttgaagagagagtgtgtgcgtgtgtgtttattgatcatatagcatattattcaaacattttctataactcat |
3375945 |
T |
|
| Q |
113 |
tctcatcaaacccaaatttcattccttttatattcttttctagttcctcttttggtttctctcaataacactaaaccactttaatcacaaattaaattct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3375946 |
tctcatcaaacccaaatttcattccttttatattcttttctagttcctcttttggtttctctcaataacactaaaccactttaatcacaaattaaattct |
3376045 |
T |
|
| Q |
213 |
tagaattcaattatcgctattttctttctctaccaatctcttgagctagaaagaaagatagttt |
276 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3376046 |
tagaattcaattatcgttattttctttctctaccaatctcttgagctagaaagaaagatagttt |
3376109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University