View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_9 (Length: 637)
Name: NF17833_low_9
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 102 - 620
Target Start/End: Complemental strand, 30967301 - 30966767
Alignment:
| Q |
102 |
aagcagagtttgtagctgcagcttcttgtgcttgtcaagcagtttggctcagaaggatcctggaacaaattgcactgtcattcagtgtgataatagttca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30967301 |
aagcagagtttgtagctgcagcttcttgtgcttgtcaagcagtttagctcagaaggatcctggaacaaattgcactgtcattcagtgtgataatagttca |
30967202 |
T |
|
| Q |
202 |
gctattaaactgcccaaaaatcctgtattgcatgggaagtgtaaacatatagatgttagataccactttctcagggatcttacaaaataaggaatagttg |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30967201 |
tctattaaactgcccaaaaatcctgtattgcatgggaagtgtaaacatatagatgttagataccactttctcagggatcttacaaaataaggaatagttg |
30967102 |
T |
|
| Q |
302 |
agatgtcacactgcagcactcaagaacatatagcagatattatgaccaagcttttgaagttggagaca-ttttgctaggcatctgtgaagtttctagcta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
30967101 |
agatgtcacactgcagcactcaagaacatatagcagatattatgaccaagcctttgaagtttgagacatttttgctaggcatctgtgaagtttctagcta |
30967002 |
T |
|
| Q |
401 |
agctgnnnnnnnnnagttctttgtttttctattcagtatgtttgtatgtttgtaaactgattttgtgtatcatgaagttcagtttagggaagtgtttctt |
500 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30967001 |
agctgtttttttttagttctttgtctttctattcagtatgtttgtatgtttgtaaactgattttgtgtatcatgaagttcagtttagggaagtgtttctt |
30966902 |
T |
|
| Q |
501 |
gagcattagttagtttcttttggttgcttagct---------------tattgtgtatctcaggttgctatataaagcagtcttgtatcaaactcaattc |
585 |
Q |
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| T |
30966901 |
gagtattagttagtttcttttggttgcttagctgtcaagtaactcggctattgtgtatctcaggttactatataaagcagtcttgtatcaaactcaattc |
30966802 |
T |
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| Q |
586 |
agttaatgagaatacactttgagaattgttgtata |
620 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30966801 |
agttaatgagaatacactttgagaattgttgtata |
30966767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 30967928 - 30967840
Alignment:
| Q |
15 |
aatacttattgtaagtttgtatgtagatgacttaatctacacttgaaatgatgaagtagtgtttgaagagttcaaacattctatggaaa |
103 |
Q |
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| T |
30967928 |
aatacttaccgtaagtttgtatgtagatgacttaatctacacttgaaatgatgaagaagtgtttgaagagttcaaacattctatggaaa |
30967840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 294
Target Start/End: Complemental strand, 9938751 - 9938644
Alignment:
| Q |
187 |
tgtgataatagttcagctattaaactgcccaaaaatcctgtattgcatgggaagtgtaaacatatagatgttagataccactttctcagggatcttacaa |
286 |
Q |
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|||||||||||||| |||| |||||| | ||||| || || ||||||||| || |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
9938751 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttctcagagatcttacag |
9938652 |
T |
|
| Q |
287 |
aataagga |
294 |
Q |
| |
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|| ||||| |
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| T |
9938651 |
aagaagga |
9938644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 42971834 - 42971949
Alignment:
| Q |
187 |
tgtgataatagttcagctattaaactgcccaaaaatcctgtattgcatgggaagtgtaaacatatagatgttagataccactttctcagggatcttacaa |
286 |
Q |
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|||||||||||||| | ||||| ||| | ||||||||| | ||||||||| || ||||| || |||||||||||||| ||||| ||||| ||||| | |
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| T |
42971834 |
tgtgataatagttcttccattaagctgtcaaaaaatcctatcatgcatgggagatgcaaacacattgatgttagataccattttctaagggaccttacta |
42971933 |
T |
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| Q |
287 |
aataaggaatagttga |
302 |
Q |
| |
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|| | ||||| ||||| |
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| T |
42971934 |
aagatggaattgttga |
42971949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 578
Target Start/End: Original strand, 30288291 - 30288331
Alignment:
| Q |
538 |
gtgtatctcaggttgctatataaagcagtcttgtatcaaac |
578 |
Q |
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| T |
30288291 |
gtgtatctcagtttgctatatatagcagtcttgtaccaaac |
30288331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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