View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_92 (Length: 290)
Name: NF17833_low_92
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_92 |
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| [»] scaffold0133 (2 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 9787 - 9509
Alignment:
| Q |
1 |
aaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaannnnnnnnnnnnnnnnnnnnatggccatgtgccttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9787 |
aaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaattttgtttttttccctttc-atggccatgtgccttc |
9689 |
T |
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| Q |
101 |
acagcttgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatata |
200 |
Q |
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| T |
9688 |
aacacttgttttttcccactgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatata |
9589 |
T |
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| Q |
201 |
taatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctccaatccaaacaactttgattcat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9588 |
taatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaactttgattcat |
9509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 14126 - 13857
Alignment:
| Q |
1 |
aaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaannnnnnnnnnnnnnnnnnnnatggccatgtgccttc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
14126 |
aaatctaggccacacaagaacaaatgaacggtcatgatgttgtttcatatgataagttttccaattttgtttttttccttttc-atggccatgtgccttc |
14028 |
T |
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| Q |
101 |
acagcttgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatata |
200 |
Q |
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| T |
14027 |
acaacttgttttttcctactgtcattcactaattatttatttttctatagcagccaatttgga---------gaagaactacatccactgatttaatata |
13937 |
T |
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| Q |
201 |
taatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctccaatccaaacaactttgattcat |
280 |
Q |
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| T |
13936 |
taatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaactttgattcat |
13857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10407 - 10169
Alignment:
| Q |
1 |
aaatctaggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaannnnnnnnnnnnnnnnnnnnatggccatgtgccttc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
10407 |
aaatctaggccacacaagaacaaatgaacgggcatgatgttgttacataagataagttttccaattttttttttttccttttc-atggccatgtgccttc |
10309 |
T |
|
| Q |
101 |
acagcttgnnnnnnnccaccgtcattcactaattatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatata |
200 |
Q |
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| T |
10308 |
acaacttgttttttgccactgtcattcactaattatttaattttctatagcagtcaattttgacatgttgcaaaagaactacatccactgatttaatata |
10209 |
T |
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| Q |
201 |
taatctttgaaaacaaataacaactcatatttcatcttcc |
240 |
Q |
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| T |
10208 |
taatctttgaaaacaaataacaacgcatatttcatcttcc |
10169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 134 - 280
Target Start/End: Complemental strand, 16782253 - 16782107
Alignment:
| Q |
134 |
tatttatttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttc |
233 |
Q |
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||||| ||||||||||||| ||||| || ||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16782253 |
tatttttttttctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatagataatctttgaaaacaaataacaactcatatttc |
16782154 |
T |
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| Q |
234 |
atcttcctagagcaaagtcatctccaatccaaacaactttgattcat |
280 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
16782153 |
atcttcctagagcaaagtcatctctaatctaaacaactttgattcat |
16782107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 16867041 - 16867150
Alignment:
| Q |
158 |
ttttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtc-atct |
256 |
Q |
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|||||||| |||||| |||||| || |||| || |||||| |||| | ||||||||||||||||| |||| |||| ||||| | ||||||||| |||| |
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| T |
16867041 |
ttttgacaagttgcatcagaactgcaaccaccgagttaataaataacccttgaaaacaaataacaaagcata-ttcaacttccaaaagcaaagtctatct |
16867139 |
T |
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| Q |
257 |
ccaatccaaac |
267 |
Q |
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|||| |||||| |
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| T |
16867140 |
ccaaaccaaac |
16867150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 38938380 - 38938502
Alignment:
| Q |
144 |
tctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctag |
243 |
Q |
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|||| |||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||| || |||||||||||||||||| |
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| T |
38938380 |
tctacagcagccaatattgacaagttgcagaagaactacatccactgatttaatagacaatctttgaaaaaaaataactacacatatttcatcttcctag |
38938479 |
T |
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| Q |
244 |
agcaaagtcatctccaatccaaac |
267 |
Q |
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||||||| |||||||||||||||| |
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| T |
38938480 |
agcaaag-catctccaatccaaac |
38938502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 11983113 - 11983167
Alignment:
| Q |
213 |
acaaataacaactcatatttcatcttcctagagcaaagtcatctccaatccaaac |
267 |
Q |
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|||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11983113 |
acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaac |
11983167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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