View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_93 (Length: 285)
Name: NF17833_low_93
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_93 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 6737025 - 6736764
Alignment:
| Q |
17 |
attcttatgagtactgatcaatgcagacaaaaggccagcagatgacaagacaatcggcttcgaaaacaatcccttcccatccaaaatatcatccaaagcc |
116 |
Q |
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| T |
6737025 |
attcttatgagtactgatcaatgcagacaaaaggccagcagatgacaagacaataggcttggaaaacaatcccttcccatccaaaatatcatccaaagcc |
6736926 |
T |
|
| Q |
117 |
atcaacccatcagccaaatcttgaacaattgaaagcttcttcatcaaaatcttctctctcaatttcctcaatttaatttcctcttctccacaaccatccc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6736925 |
atcaacccatcagccaaatcttgaacaattgaaagcttcttcatcaaaatcttctctctcaatttcctcaacttaatttcctcttctccacaaccatccc |
6736826 |
T |
|
| Q |
217 |
ctctcaaaacattaatctcaatactcgatttcaaacacgcttcatcctcaacaatattcttc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6736825 |
ctctcaaaacattaatctcaatactcgatttcaaacacgcttcatcctcaacaataatcttc |
6736764 |
T |
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