View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17833_low_94 (Length: 281)

Name: NF17833_low_94
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17833_low_94
NF17833_low_94
[»] scaffold0092 (2 HSPs)
scaffold0092 (111-263)||(22953-23105)
scaffold0092 (45-91)||(23149-23195)
[»] chr3 (3 HSPs)
chr3 (115-263)||(24172208-24172356)
chr3 (1-91)||(24172404-24172494)
chr3 (111-260)||(53223177-53223322)
[»] chr5 (8 HSPs)
chr5 (111-263)||(24518484-24518636)
chr5 (115-264)||(3278210-3278359)
chr5 (115-264)||(41913388-41913537)
chr5 (183-259)||(35077365-35077441)
chr5 (3-59)||(24518348-24518404)
chr5 (185-245)||(43400196-43400256)
chr5 (114-258)||(6022554-6022698)
chr5 (118-158)||(40881090-40881130)
[»] chr1 (4 HSPs)
chr1 (114-259)||(32302826-32302971)
chr1 (115-263)||(48854573-48854722)
chr1 (182-255)||(46781644-46781717)
chr1 (185-264)||(3861333-3861412)
[»] chr4 (4 HSPs)
chr4 (114-259)||(12725953-12726098)
chr4 (111-231)||(25317518-25317638)
chr4 (1-91)||(25317682-25317772)
chr4 (115-245)||(7704605-7704735)
[»] chr7 (5 HSPs)
chr7 (114-264)||(21375694-21375844)
chr7 (181-255)||(44362230-44362304)
chr7 (196-253)||(13064166-13064223)
chr7 (185-245)||(35124350-35124410)
chr7 (192-264)||(39464126-39464198)
[»] chr6 (3 HSPs)
chr6 (111-248)||(23286557-23286693)
chr6 (196-261)||(2683785-2683850)
chr6 (196-255)||(14676314-14676373)
[»] chr8 (5 HSPs)
chr8 (114-260)||(25110027-25110173)
chr8 (181-255)||(20129767-20129841)
chr8 (115-200)||(32096482-32096567)
chr8 (30-91)||(44209946-44210007)
chr8 (186-266)||(5513629-5513709)
[»] chr2 (3 HSPs)
chr2 (182-259)||(24221127-24221204)
chr2 (183-255)||(37599355-37599427)
chr2 (181-245)||(37108140-37108204)


Alignment Details
Target: scaffold0092 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 23105 - 22953
Alignment:
Q  111 tgtctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  23105 tgtctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtgttattgaacatacgttcgttcctt 23006  T
Q  211 tccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacatatg 263  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23005 tccttccaaagaatccagaccgaggtaaaccaaataatcctgaaaaacatatg 22953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 23195 - 23149
Alignment:
Q  45 cgaactaacaaaacatacaagaaattacaagtggacgcccatacaaa 91  Q
    |||| ||| |||||| |||| ||||||||||||||||||||||||||    
T  23195 cgaagtaataaaacagacaaaaaattacaagtggacgcccatacaaa 23149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 115 - 263
Target Start/End: Complemental strand, 24172356 - 24172208
Alignment:
Q  115 tgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctttcct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  24172356 tgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaatgtgtcgataccatattattgaacacacgttcgtttctttcct 24172257  T
Q  215 tccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacatatg 263  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24172256 tccaaagaatccaaactgaggtaaaccaaataatcctgaaaaacatatg 24172208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 24172494 - 24172404
Alignment:
Q  1 aaagtatttacaagatcaaagtgctaactaaaacaaagcagcatcgaactaacaaaacatacaagaaattacaagtggacgcccatacaaa 91  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||||||||||||| |||||||||    
T  24172494 aaagtatttacaagatcaaagtgctaactaaaacaaagcagcaccgatataacaaaacagacaagaaattacaagtggacgtccatacaaa 24172404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 53223177 - 53223322
Alignment:
Q  111 tgtctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctt 210  Q
    |||||||||||| || | |||||||||| |||| | |||||||||||| ||||||||| ||| ||| |||  | | || ||||||||| | || ||||||    
T  53223177 tgtctgttttgatttcagccataaaaaatatgttagtttaaccttttcaatgagggtggaagatgtagatgtcatgttgttgaacacaaggtcattcctt 53223276  T
Q  211 tccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacat 260  Q
    ||||||||||||| |||    |||||||||||||| ||||||||||||||    
T  53223277 tccttccaaagaaccca----gaggtaaaccaaatgatcctgaaaaacat 53223322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 111 - 263
Target Start/End: Original strand, 24518484 - 24518636
Alignment:
Q  111 tgtctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  ||| |||||||||||| |||||||||||    
T  24518484 tgtctgttttgactttaaccataaaaaagatgtcattttaaacttttctatgagggtgaaagatgtcgatgtcgtgttattgaacacatgttcgttcctt 24518583  T
Q  211 tccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacatatg 263  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24518584 tccttccaaagaatcgaaaccgaggtaaaccaaataatcctgaaaaacatatg 24518636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 115 - 264
Target Start/End: Original strand, 3278210 - 3278359
Alignment:
Q  115 tgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctttcct 214  Q
    |||||| |||||||||||||||||||||||| |||||||||||| || |||||  || |||||||  || | |||||||||||||| || ||| ||||||    
T  3278210 tgttttaactttaaccataaaaaagatgtcagtttaaccttttcgattagggtagaatgtgtcgaagccatgttattgaacacacggtcattcatttcct 3278309  T
Q  215 tccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacatatgt 264  Q
    |||||||||  || || |||||||||||||||||||| ||||||||||||    
T  3278310 tccaaagaactcatacagaggtaaaccaaataatcctaaaaaacatatgt 3278359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 115 - 264
Target Start/End: Original strand, 41913388 - 41913537
Alignment:
Q  115 tgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctttcct 214  Q
    |||||||||||||||||||||||||||| ||  ||||||||||| || ||    | |||||||||  |||| |||||||||||||| |||||||| || |    
T  41913388 tgttttgactttaaccataaaaaagatgccagcttaaccttttcaataagtaaaacaggtgtcgaggccgtgttattgaacacacgatcgttcctctctt 41913487  T
Q  215 tccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacatatgt 264  Q
    ||||||||| |||||| | ||||||||||||||| || || |||||||||    
T  41913488 tccaaagaacccaaactgtggtaaaccaaataattctaaagaacatatgt 41913537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 35077441 - 35077365
Alignment:
Q  183 cgtattattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaaca 259  Q
    |||||| | ||| ||||| || |||||||||||||| |||| ||||||  ||| |||||||||||||||||||||||    
T  35077441 cgtattttggaagacacgatcattcctttccttccagagaacccaaacataggcaaaccaaataatcctgaaaaaca 35077365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 24518348 - 24518404
Alignment:
Q  3 agtatttacaagatcaaagtgctaactaaaacaaagcagcatcgaactaacaaaaca 59  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||||||  |||||||||    
T  24518348 agtatttacaagattaaagtgctaaccaaatcaaagcaccatcgaaacaacaaaaca 24518404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 43400196 - 43400256
Alignment:
Q  185 tattattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaat 245  Q
    |||| |||||||| || || |||||||||||||||| |||||| || ||||||||||||||    
T  43400196 tattgttgaacacgcgatcattcctttccttccaaataatccacacagaggtaaaccaaat 43400256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 6022554 - 6022698
Alignment:
Q  114 ctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctttcc 213  Q
    |||||| || ||||||||  |||||||||||| |||||||||||| | |||  || | ||||||||||||   || || ||||  || || |||||||||    
T  6022554 ctgtttggattttaaccaagaaaaagatgtcagtttaaccttttcaacgagtctggatggtgtcgataccaagtttttaaacattcggtcattcctttcc 6022653  T
Q  214 ttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaac 258  Q
    ||||| |  | |||||| |||| ||| ||||||||  ||||||||    
T  6022654 ttccagatgacccaaacagaggcaaatcaaataattttgaaaaac 6022698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 40881090 - 40881130
Alignment:
Q  118 tttgactttaaccataaaaaagatgtcattttaaccttttc 158  Q
    ||||| ||||||||||||||||||||||  |||||||||||    
T  40881090 tttgattttaaccataaaaaagatgtcagcttaaccttttc 40881130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 32302826 - 32302971
Alignment:
Q  114 ctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctttcc 213  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||||    
T  32302826 ctgttttgattttaaccataaaaaagatgtcattttaaccttttctatgaggttgaaaggtgtcgataccgtgttgttgaacacacgatcgttcctttcc 32302925  T
Q  214 ttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaaca 259  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  32302926 ttccaaagaatccaaaccgaggtgaaccaaataatcttgaaaaaca 32302971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 115 - 263
Target Start/End: Original strand, 48854573 - 48854722
Alignment:
Q  115 tgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctttcct 214  Q
    |||| ||||||||||||  |||||||||||| ||||||| |||| ||||| ||| | |||| |||   |||||| || ||||||||  ||||||||||||    
T  48854573 tgttctgactttaaccaagaaaaagatgtcagtttaaccctttcaatgagcgtggagggtggcgacgtcgtatttttaaacacacgggcgttcctttcct 48854672  T
Q  215 tccaaagaatccaaaccgaggt-aaaccaaataatcctgaaaaacatatg 263  Q
    ||||||||||||| ||  |||| |||||||||||||||||||||||||||    
T  48854673 tccaaagaatccacacaaaggtaaaaccaaataatcctgaaaaacatatg 48854722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 46781717 - 46781644
Alignment:
Q  182 ccgtattattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaa 255  Q
    ||||||| | ||| ||||| || |||||||||||||| |||| |||||| |||| |||||||||||||||||||    
T  46781717 ccgtattttggaatacacgatcattcctttccttccatagaacccaaacagaggcaaaccaaataatcctgaaa 46781644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 3861412 - 3861333
Alignment:
Q  185 tattattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacatatgt 264  Q
    |||| |||||| |||| || ||| |||||||||||| || |||||| ||||||||| |||| ||  ||||||||||||||    
T  3861412 tattgttgaacgcacgatcattcatttccttccaaataacccaaacagaggtaaactaaatgattttgaaaaacatatgt 3861333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 259
Target Start/End: Original strand, 12725953 - 12726098
Alignment:
Q  114 ctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctttcc 213  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| || ||||||||||||    
T  12725953 ctgttttgattttaaccataaaaaagatgtcattttaaccttttctatgaggttgaaaggtgtcgataccgtgttgttgaacacgcgatcgttcctttcc 12726052  T
Q  214 ttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaaca 259  Q
    ||| ||||||||||||||||||| |||||||||||| |||||||||    
T  12726053 ttctaaagaatccaaaccgaggtgaaccaaataatcttgaaaaaca 12726098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 25317638 - 25317518
Alignment:
Q  111 tgtctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||    
T  25317638 tgtctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgatattgtattattgaacacacgttcgtttctt 25317539  T
Q  211 tccttccaaagaatccaaacc 231  Q
    |||||| ||||||||||||||    
T  25317538 tccttctaaagaatccaaacc 25317518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 25317772 - 25317682
Alignment:
Q  1 aaagtatttacaagatcaaagtgctaactaaaacaaagcagcatcgaactaacaaaacatacaagaaattacaagtggacgcccatacaaa 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  || |||| | | |||||||||||||||||||||||||||||    
T  25317772 aaagtatttacaagatcaaagtgctaactaaaacaaagcagcatcgaaaaaataaaagagataagaaattacaagtggacgcccatacaaa 25317682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 7704605 - 7704735
Alignment:
Q  115 tgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctttcct 214  Q
    |||||||| || |||||||||||||| |||| |||||||||||| ||||| ||| | | ||| ||| || | || || |||||||| || || |||||||    
T  7704605 tgttttgatttcaaccataaaaaagaagtcagtttaaccttttcgatgagagtggaggatgtagatgccttgttgttaaacacacggtcatttctttcct 7704704  T
Q  215 tccaaagaatccaaaccgaggtaaaccaaat 245  Q
    ||||||||| ||| || || |||||||||||    
T  7704705 tccaaagaacccacacagatgtaaaccaaat 7704735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 21375694 - 21375844
Alignment:
Q  114 ctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctttcc 213  Q
    ||||||||| || | ||||||||||||||||| |||||||||||| ||| ||||| ||| ||| ||| || | || |||||||||    | ||| ||| |    
T  21375694 ctgttttgatttcagccataaaaaagatgtcagtttaaccttttcaatgggggtggaagatgtagatgccatgtttttgaacacattgccattcattttc 21375793  T
Q  214 ttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacatatgt 264  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||||||||    
T  21375794 ttccaaagaacccaaacagaggtaaaccaaatgatcctgaaaaacatatgt 21375844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 44362230 - 44362304
Alignment:
Q  181 accgtattattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaa 255  Q
    |||||||| | ||| ||||| || |||||||||||||| |||| |||||| |||| |||||||||||||||||||    
T  44362230 accgtattttggaatacacgatcattcctttccttccatagaacccaaacagaggcaaaccaaataatcctgaaa 44362304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 13064223 - 13064166
Alignment:
Q  196 acacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctga 253  Q
    ||||| || ||||||| ||||||||||| |||||| |||| |||||||||||||||||    
T  13064223 acacgatcattccttttcttccaaagaacccaaacagaggcaaaccaaataatcctga 13064166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 35124350 - 35124410
Alignment:
Q  185 tattattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaat 245  Q
    |||||||||| || || || |||||||||||||||| |||||| || ||||||||||||||    
T  35124350 tattattgaatacgcgatcattcctttccttccaaataatccacacagaggtaaaccaaat 35124410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 39464126 - 39464198
Alignment:
Q  192 gaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacatatgt 264  Q
    |||| |||| || ||||||||||||||||  |||||||| || ||||||||||| ||  ||||||||||||||    
T  39464126 gaacgcacggtcattcctttccttccaaattatccaaacagatgtaaaccaaatgattttgaaaaacatatgt 39464198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 248
Target Start/End: Original strand, 23286557 - 23286693
Alignment:
Q  111 tgtctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctt 210  Q
    ||||||||||||||||||||| |||||||||||||  ||||| ||||| || ||    |||||||||||   ||| |||||||||||||| || |||||     
T  23286557 tgtctgttttgactttaacca-aaaaaagatgtcagcttaactttttcgataagtaaaaaaggtgtcgaggtcgtgttattgaacacacggtcattcctc 23286655  T
Q  211 tccttccaaagaatccaaaccgaggtaaaccaaataat 248  Q
    || ||||||||||||||||| | |||||||||||||||    
T  23286656 tctttccaaagaatccaaactgtggtaaaccaaataat 23286693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 2683850 - 2683785
Alignment:
Q  196 acacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacata 261  Q
    ||||| || ||||||||||||||||| | |||||| |||| |||||||||||| |||||| |||||    
T  2683850 acacggtcattcctttccttccaaaggacccaaacagaggcaaaccaaataattctgaaatacata 2683785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 14676373 - 14676314
Alignment:
Q  196 acacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaa 255  Q
    ||||| || |||||||| |||||||||| |||||| |||| |||| ||||||||||||||    
T  14676373 acacgatcattcctttcattccaaagaacccaaacagaggcaaacaaaataatcctgaaa 14676314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 260
Target Start/End: Complemental strand, 25110173 - 25110027
Alignment:
Q  114 ctgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacgttcgttcctttcc 213  Q
    ||||||||||||||||||  |||||||||||| ||| |||||||||||||   || | |||| | ||  |||||| || |||||| | || ||| |||||    
T  25110173 ctgttttgactttaaccaagaaaaagatgtcaatttgaccttttctatgactatggacggtgccaatgtcgtatttttaaacacatggtccttcatttcc 25110074  T
Q  214 ttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacat 260  Q
    ||||| |||| ||| ||||| || |||||||||| |||||| |||||    
T  25110073 ttccatagaacccataccgaagtgaaccaaataaccctgaagaacat 25110027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 20129841 - 20129767
Alignment:
Q  181 accgtattattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaa 255  Q
    |||||||| | ||| ||||| || |||||||||||||| |||| |||||| |||| |||||||||||||||||||    
T  20129841 accgtattttggaatacacgatcattcctttccttccatagaacccaaacagaggcaaaccaaataatcctgaaa 20129767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 32096567 - 32096482
Alignment:
Q  115 tgttttgactttaaccataaaaaagatgtcattttaaccttttctatgagggtgaaaggtgtcgataccgtattattgaacacacg 200  Q
    |||||||| || |||||||||||||| |||| |||||||||||| ||||| ||| | | ||| ||| ||||||| || ||||||||    
T  32096567 tgttttgatttcaaccataaaaaagaagtcagtttaaccttttcgatgagagtggaggatgtagatgccgtattgttaaacacacg 32096482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 44209946 - 44210007
Alignment:
Q  30 aaaacaaagcagcatcgaactaacaaaacatacaagaaattacaagtggacgcccatacaaa 91  Q
    |||||||||||||| | ||  ||||||||| | || |||||||||||||||| |||||||||    
T  44209946 aaaacaaagcagcaacaaagcaacaaaacagataaaaaattacaagtggacgtccatacaaa 44210007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 5513709 - 5513629
Alignment:
Q  186 attattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaacatatgtat 266  Q
    |||||||||| || | || ||||||||||||||||  | |||||  |||||||||||||| ||  | ||||||||||||||    
T  5513709 attattgaacgcatgatcattcctttccttccaaattacccaaaaagaggtaaaccaaatgattttaaaaaacatatgtat 5513629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 24221204 - 24221127
Alignment:
Q  182 ccgtattattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaaaaca 259  Q
    ||||||| | ||| ||||| || |||||||||||||| |||| ||||||  ||| |||||||||||||||||||||||    
T  24221204 ccgtattttggaatacacgatcattcctttccttccagagaacccaaacataggcaaaccaaataatcctgaaaaaca 24221127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 37599427 - 37599355
Alignment:
Q  183 cgtattattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaataatcctgaaa 255  Q
    |||||| | ||| ||||| || ||||||||||| ||||||| |||||| |||| ||||||||||||| |||||    
T  37599427 cgtattttggaatacacgatcattcctttcctttcaaagaacccaaacagaggcaaaccaaataatcttgaaa 37599355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 37108140 - 37108204
Alignment:
Q  181 accgtattattgaacacacgttcgttcctttccttccaaagaatccaaaccgaggtaaaccaaat 245  Q
    |||||||| | ||||| ||| | |||||||||||||||||| ||| |||| |||| |||||||||    
T  37108140 accgtattttggaacatacggttgttcctttccttccaaagcatctaaacagaggcaaaccaaat 37108204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University