View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17833_low_96 (Length: 275)
Name: NF17833_low_96
Description: NF17833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17833_low_96 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 28 - 258
Target Start/End: Original strand, 1622299 - 1622529
Alignment:
| Q |
28 |
atatatctatgtgaaacaagatagtaacttatatataacttatcaaaaccaaaacgttaaagaattgaaatgatgaaggaacaattttgaactgaaatga |
127 |
Q |
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| T |
1622299 |
atatatctatgtgaaacaagatagtaacttatatataacttatcaaaaccaaaacgctaaagaattgaaatgatggaggaacaattttgaactgaaatga |
1622398 |
T |
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| Q |
128 |
gaatgttgtagcctatggtgtctatatataagcagagaaatgtcggtgtgtatgtatgggccgggtttgaaacaaatgttacggttagcaatcatactat |
227 |
Q |
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| T |
1622399 |
gaatgttgtagcctatggtgtctatatataagcagagaaatgtcggtgtgtatgtatgggccgggtttgaaacaaatgttacggttagcaatcatactat |
1622498 |
T |
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| Q |
228 |
ttccaaatataatttcttttttgatttatta |
258 |
Q |
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| T |
1622499 |
ttccaaatataatttcttttttgatttatta |
1622529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 40049393 - 40049202
Alignment:
| Q |
5 |
ccctagccgctggatgtggatacatatatctatgtgaaacaagatagtaacttatatataacttatcaaaaccaaaacgttaaagaattgaaatga---- |
100 |
Q |
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| T |
40049393 |
ccctagccgctggatgtggatacatat--ctatgtgacacaagattgtaacttata----acttagcaaaaccaatacgttacagaattgaaatgaaatg |
40049300 |
T |
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| Q |
101 |
-tgaaggaacaattttgaactgaaatgagaatgttgtagcctatggtgtctatatataagcagagaaatgtcggtgtgtatgtatgggccgggtttga |
197 |
Q |
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| T |
40049299 |
atgaaggaacaattttgaactgaaacgaaaaggttgtagcctatggtgtctatatataaggagagaaatgttggtgtgtatgtattggctgggtttga |
40049202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 40049179 - 40049134
Alignment:
| Q |
194 |
ttgaaacaaatgttacggttagcaatcatactatttccaaatataa |
239 |
Q |
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|||||||||||||||| ||| |||||||||| |||||||||||||| |
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| T |
40049179 |
ttgaaacaaatgttacagtttgcaatcataccatttccaaatataa |
40049134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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