View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17834_high_1 (Length: 460)
Name: NF17834_high_1
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Original strand, 27977409 - 27977840
Alignment:
| Q |
15 |
aaaaagaacacaaaaggtaatagaatacctttgaggtctttcttgtttggtgtcaagttaaagagacaaaaacagtatcaatcactgttttcatgtgtca |
114 |
Q |
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| T |
27977409 |
aaaaagaacacaaaaggtaatagaatacctttgaggtctttcttgtttggtgtcaagttaaagagacaaaagcagtatcaatcactgttttcatgtgtca |
27977508 |
T |
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| Q |
115 |
atcctacactgtctaaacaaaatagtatcaatgagcaagcaccagctccaatagagagagagcaaatttgatttcctttatttgagtacttggaaaattg |
214 |
Q |
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| T |
27977509 |
atcctacactgtctaaacaaaatagtatcaatgagcaagtaccagctccaatagagagagagcaaatttgatttcctttatttgagtacttggaaaattg |
27977608 |
T |
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| Q |
215 |
ttaaggatattgtagtgtgattatgtgacaatatatagaacatgaatgttattatggtatttctaatttcaaggttgaattttcttctataattcttgca |
314 |
Q |
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| T |
27977609 |
ttaaggatattgtagtgtgattgtgtgacaatatatagaacatgaatgttattatggtatttctaatttcaaggttggattttcttctataattcttgca |
27977708 |
T |
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| Q |
315 |
tctttaaaatccatgtatttgtgtttaatgtgttcatatattcagaaagtaaatgnnnnnnnnnctcttgatttcaagtcaattttgaaatgnnnnnnnc |
414 |
Q |
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| T |
27977709 |
tctttaaaatccatgtatttgtgtttaatgtgttcatatattcagaaagcaaatg-ttttttctctcttgatttcaagtcaattttgaaatgtttttttc |
27977807 |
T |
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| Q |
415 |
tcatgaatataataaccagcttacttttatgat |
447 |
Q |
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| T |
27977808 |
tcatgaatataataaccagcttacttttatgat |
27977840 |
T |
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