View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17834_high_10 (Length: 212)
Name: NF17834_high_10
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 6325703 - 6325526
Alignment:
| Q |
17 |
agtttttgagggtaaaattgagagtggtatttccgagttacctgcagttaggtcgcttcctatctagagaaattaattttagtgtgttgtattttcattt |
116 |
Q |
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| T |
6325703 |
agtttttgagggtaaaactgagagtggtatttccgagttacctgtagttaggtcgcttcctatataaagaaattaatttcagtgtgttgtattttcattt |
6325604 |
T |
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| Q |
117 |
tgttgtatgagtttctattttttgtcatgctgttgtactatatgatgtaaaatgttcatttgagatttgtaatatcctat |
196 |
Q |
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| T |
6325603 |
tgttgtatgagtttctattttttgtcatgctgttgtac--tatgatgtaaaatgttcatttgaaatttgtaatatcctat |
6325526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 6333146 - 6333011
Alignment:
| Q |
51 |
gagttacctgcagttaggtcgcttcctatctagagaaattaattttagtgtgttgtattttcattttgttgtatgagtttctattttttgtcatgctgtt |
150 |
Q |
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| T |
6333146 |
gagttacctgcagttaggtcgattcctatctagagaaattaa----------------tttcattttgttgtatgagattctattttttatcatgttgtt |
6333063 |
T |
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| Q |
151 |
gtact---atatg--atgtaaaatgttcatttgagatttgtaatatcctatg |
197 |
Q |
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| T |
6333062 |
gtactgtactatgatatgtaaaatgttcatttgagatttgtaatatcctatg |
6333011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 6219929 - 6220007
Alignment:
| Q |
114 |
ttttgttgtatgagtttctatttttt-gtcatgctgttgtactatatgatgtaaaatgttcatttgagatttgtaatatcctat |
196 |
Q |
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| T |
6219929 |
ttttgttgaatgagtttctatttttttgtcaagttgtt-----atatgatgtaaaatgttcatttgaaatttgtaatatcctat |
6220007 |
T |
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