View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17834_high_2 (Length: 453)
Name: NF17834_high_2
Description: NF17834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17834_high_2 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 1765324 - 1765515
Alignment:
| Q |
30 |
tgtataatagtcctagagatgatgatacagtccgcaataaattttagggacgaaaagtactgaaaatatttttgggagtaaaaaagaccaaaaatttgta |
129 |
Q |
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| T |
1765324 |
tgtataatagtcctagagatgatgatgcagtccgcaataaattttagggacgaaaagtactgaaaatatttttgggagtaaaaaagaccaaaaatttgta |
1765423 |
T |
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| Q |
130 |
ggtactaacaacaaaaactgtaaaatttataggaattaaagatatatttactcttaaaaaatatatataccatgtagtgtttatatgtgtgt |
221 |
Q |
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| T |
1765424 |
cgtactaacaacaaaaactataaaatttataggaattaaagatatatttactcttaaaaaatatatataccatgtagtgtttatatgtgtgt |
1765515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 249 - 430
Target Start/End: Original strand, 1765550 - 1765727
Alignment:
| Q |
249 |
actcttttggttgggcgtttgtaaacctcatatgtgagtttgaaaagataaacgtgagtacgtacgttaaaaaatacaagtgtttgggtaatcatttttt |
348 |
Q |
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| T |
1765550 |
actcttttggttgggcgtttgtaaacctcatatgtgagtttgaaaaggtaaacatgagtatgt----taaaaaatacaagtgtttgggtaattatttttt |
1765645 |
T |
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| Q |
349 |
aaattaattctagccttcaaaatcgattcacatgaaagctggtacttgcttctatggtcacagtgaaaattcattcaagaac |
430 |
Q |
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| T |
1765646 |
aaattaattctagccctcaaaatcgattgacatggaagctggtacttgcttctactgtcaccgtgaaaattcattcaagaac |
1765727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 314 - 422
Target Start/End: Complemental strand, 138892 - 138782
Alignment:
| Q |
314 |
gttaaaaaatacaagtgtttgggtaatcattttttaaattaattctagccttcaaaatcgattcacatgaaagctggtactt---gcttctatggtcaca |
410 |
Q |
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| T |
138892 |
gttaaaaaata-aagtgtttggataatcattttttaaattgattctagccctcaaaattgattcacatggaagctagtacttgtagcttctatggtcacg |
138794 |
T |
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| Q |
411 |
gtgaaaattcat |
422 |
Q |
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| T |
138793 |
gtgaaaattcat |
138782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 426
Target Start/End: Complemental strand, 34826826 - 34826651
Alignment:
| Q |
249 |
actcttttggttgggcgtttgtaaacctcatatgtgagtttgaaaagataaacgtgagtacgtacgttaaaaaatacaagtgtttgggtaatcatttttt |
348 |
Q |
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| T |
34826826 |
actcgtttggttgtgcgtttgcaaacatcaaacttgagtttgaaaaagtaaacgtgagtt--ta--ttaaaatata-aagtgtttggctaatcatttttt |
34826732 |
T |
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| Q |
349 |
aaattaattctagccttcaaaatcgattcacatgaaagctggtactt---gcttctatggtcacagtgaaaattcattcaa |
426 |
Q |
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| T |
34826731 |
gaattgattctagccctcaaaatcgattcacatagaagctggtacttatagcttctacggtcgcggtgaaaattcattcaa |
34826651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 396
Target Start/End: Complemental strand, 2695739 - 2695611
Alignment:
| Q |
263 |
gcgtttgtaaacctcatatgtgagtttgaaaagataaacgtgagtacgtacgttaaaaaatacaagtgtttgggtaatcattttttaaattaattctagc |
362 |
Q |
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| T |
2695739 |
gcgtttgcaaacctcaaacgtgaatttgaaaagataaaagcgagtttgt----taaaaaaaa-aagtgtttgggtaatcattttttaaattgattctaac |
2695645 |
T |
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| Q |
363 |
cttcaaaatcgattcacatgaaagctggtacttg |
396 |
Q |
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| T |
2695644 |
cctcaaaatcgctttacatggaagctagtacttg |
2695611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 421
Target Start/End: Original strand, 49177632 - 49177804
Alignment:
| Q |
249 |
actcttttggttgggcgtttgtaaacctcatatgtgagtttgaaaagataaacgtgagtacgtacgttaaaaaatacaagtgtttgggtaatcatttttt |
348 |
Q |
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| T |
49177632 |
actcgtttggttgtgcgtttgcaaacctcaaacgtgagtttgaaaaggtaaaagtgagtttgt---taaaaaaaaaaaagtgtttaggtaatcatgtttt |
49177728 |
T |
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| Q |
349 |
aaattaattctagccttcaaaatcgattcacatgaaagctggtactt---gcttctatggtcacagtgaaaattca |
421 |
Q |
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| T |
49177729 |
aaattgattccagccctcaaaatcgctttacatggaagccagtacttatagcttctacggtcacggtgaaaattca |
49177804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 25060775 - 25060838
Alignment:
| Q |
314 |
gttaaaaaatacaagtgtttgggtaatcattttttaaattaattctagccttcaaaatcgattca |
378 |
Q |
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| T |
25060775 |
gttaaaaaata-aagtgtttggataaccaatttttaaattgattctagccttcaaaattgattca |
25060838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 32737113 - 32737042
Alignment:
| Q |
326 |
aagtgtttgggtaatcattttttaaattaattctagccttcaaaatcgattcacatgaaagctggtacttgc |
397 |
Q |
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| T |
32737113 |
aagtgtttgggtactcattttttaaattgattttagccctcaaaatcgctttacatggaagctagtacttgc |
32737042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 382
Target Start/End: Original strand, 28751928 - 28751991
Alignment:
| Q |
319 |
aaaatacaagtgtttgggtaatcattttttaaattaattctagccttcaaaatcgattcacatg |
382 |
Q |
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| T |
28751928 |
aaaataaaagtgtttgggtaaccatttttcaaattgattataaccctcaaaatcgattcacatg |
28751991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 41454179 - 41454211
Alignment:
| Q |
315 |
ttaaaaaatacaagtgtttgggtaatcattttt |
347 |
Q |
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| T |
41454179 |
ttaaaaaatacaagtgtttgggtaaccattttt |
41454211 |
T |
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